AllenNeuralDynamics/aind-dynamic-foraging-basic-analysis

View on GitHub

compute behavioral metrics and generate basic plottings for the dynamic foraging task

Stars: 1
Forks: 0
Open beginner issues: 0
Indexed issues: 20
Avg merge: 8d 19h
Merged PRs (30d): 1

Dominant language: Python
License: MIT
Last GitHub push: Sep 10, 2026
Latest indexed: Sep 13, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed

Open All

20 open issues indexed

Remove dependency on aind_ephys_utils Open

AllenNeuralDynamics/aind-dynamic-foraging-basic-analysis#9 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
plot.plot_foraging_session does not operate on dataframes, but rather on lists of events. Open

AllenNeuralDynamics/aind-dynamic-foraging-basic-analysis#10 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
annotations.annotate_rewards should ensure that all rewards either have a triggering lick, or are manual/auto water Open

AllenNeuralDynamics/aind-dynamic-foraging-basic-analysis#17 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
Update streamlit plotly session scroller to use lick annotations Open

AllenNeuralDynamics/aind-dynamic-foraging-basic-analysis#18 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
Formalize notion of an analysis object Open

AllenNeuralDynamics/aind-dynamic-foraging-basic-analysis#23 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
Additional trial by trial metrics to include Open

AllenNeuralDynamics/aind-dynamic-foraging-basic-analysis#27 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
Add trial by trial metrics to trial-based session plot (plot_foraging_session) Open

AllenNeuralDynamics/aind-dynamic-foraging-basic-analysis#28 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
plot_foraging_session treats ignored trials as "left" in choice plot Open

AllenNeuralDynamics/aind-dynamic-foraging-basic-analysis#32 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
finish migrating session stats to plot_foraging_session.py Open

AllenNeuralDynamics/aind-dynamic-foraging-basic-analysis#34 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
add lick statistics to trial by trial metrics Open

AllenNeuralDynamics/aind-dynamic-foraging-basic-analysis#35 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
vertical option in plot_foraging_Session.py doesnt work reliably Open

AllenNeuralDynamics/aind-dynamic-foraging-basic-analysis#37 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
add example notebooks Open

AllenNeuralDynamics/aind-dynamic-foraging-basic-analysis#38 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Unbaited task in session scroller shows up as baited Open

AllenNeuralDynamics/aind-dynamic-foraging-basic-analysis#41 · 4 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
Add FIP channel to interpretable name mapper Open

AllenNeuralDynamics/aind-dynamic-foraging-basic-analysis#45 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
Add goCue_time or choice_time line to the plot Open

AllenNeuralDynamics/aind-dynamic-foraging-basic-analysis#46 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
Update plot_fip to be plot_PSTH Open

AllenNeuralDynamics/aind-dynamic-foraging-basic-analysis#72 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
Factor out all FIP functions to a FIP specific utils repo Open

AllenNeuralDynamics/aind-dynamic-foraging-basic-analysis#89 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
Add tests for python versions 3.11 to 3.14 Open

AllenNeuralDynamics/aind-dynamic-foraging-basic-analysis#93 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
Refactor multisession analysis into here Open

AllenNeuralDynamics/aind-dynamic-foraging-basic-analysis#94 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
Make a plot that shows how the automatic lick spout system was working Open

AllenNeuralDynamics/aind-dynamic-foraging-basic-analysis#95 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026

AllenNeuralDynamics/aind-dynamic-foraging-basic-analysis

Get new issues in your inbox