AllenNeuralDynamics / AllenNeuralDynamics/aind-SmartSPIM-segmentation

Initialize Neuroglancer at t=0 to avoid odd behavior

Ouverte
#21 0 commentaires 0 réactions 0 personnes assignées Voir sur GitHub
Langage dominant
Python
Étoiles
4
Forks
1
Merge moyen
4 j 4 h
PR mergées (30 j)
1

Description

Viewer links for the cell segmentation states behave differently than the stitched volume links. See [here](https://github.com/google/neuroglancer/issues/772).

This boils down to the initial position of the viewer being at t=0.5. When a user presses z to snap a rotation to the nearest data-aligned axes, the time axis snaps to t=1, which is out of bounds for the zarr volume and causes the image to disappear.

The nglink functions used to create the stitched volume link must take care of this, since the behavior is not observed there. I think the position can easily be added here:
https://github.com/AllenNeuralDynamics/aind-SmartSPIM-segmentation/blob/4d6b2495bbcf442c547dd73e0d227e88ff93a72e/code/aind_smartspim_segmentation/segmentation.py#L318

Guide de contribution

Aucun guide de contribution indexé pour ce dépôt

Évaluation

Cette issue n'a pas encore été évaluée.

Recevez les nouvelles issues par e-mail

Un résumé court des issues GitHub adaptées aux débutants.