Owner
AllenCell
20 indexed repositories · View on GitHub
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vole-core
core rendering canvas and data loading services for Vol-E volume viewer
TypeScript · 106 stars
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agave
High quality visualization for volumetric image data
C++ · 62 stars
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Python · 32 stars
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Python · 32 stars
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aics-segmentation
Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow
Jupyter Notebook · 26 stars
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cvapipe_analysis
Analysis of data produced by cvapipe for the variance paper
Jupyter Notebook · 24 stars
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Python · 24 stars
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napari-allencell-segmenter
A plugin that enables image segmentation provided by Allen Institute for Cell Science
Python · 20 stars
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segmenter_model_zoo
scripts and API for running Deep Learning models from segmenter
Jupyter Notebook · 10 stars
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Python · 7 stars
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benchmarking_representations
Benchmarking different methods for extracting unsupervised representations from images
Python · 7 stars
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allencell-segmenter-ml
Napari plugin for ml segmentation
Python · 5 stars
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endothelial-pipeline
Dynamics of ML-based morphological features indicate a shear stress-dependent bifurcation of hiPSC-derived endothelial cell states
Python · 2 stars
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cell-feature-explorer
Plot and explore data that is linked to images, with an embedded viewer
TypeScript · 2 stars
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EMT_data_analysis
This repo contains code for EMT deliverable data analysis and has dependencies associated with output from EMT_image_analysis repo.
Python · 1 star
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Python · 0 stars
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camera-alignment-core
Core algorithms for alignment of two-camera microscopy imagery
Python · 0 stars
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cellpack-client
Frontend interface for cellPACK
TypeScript · 0 stars
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cell-catalog
Cell catalog 2.0
TypeScript · 0 stars
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TypeScript · 0 stars
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Size measurement Openux
AllenCell/vole-core#380 · 1 comment · 0 reactions · 0 assignees ·
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milestone candidate
AllenCell/vole-core#381 · 3 comments · 1 reaction · 0 assignees ·
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update colorize mode Openbug Tech Debt
AllenCell/vole-core#383 · 1 comment · 0 reactions · 0 assignees ·
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AllenCell/vole-core#401 · 0 comments · 0 reactions · 0 assignees ·
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Tech Debt
AllenCell/vole-core#404 · 1 comment · 0 reactions · 0 assignees ·
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Tech Debt
AllenCell/vole-core#409 · 0 comments · 0 reactions · 0 assignees ·
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Tech Debt
AllenCell/vole-core#410 · 0 comments · 0 reactions · 0 assignees ·
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Tech Debt
AllenCell/vole-core#411 · 0 comments · 0 reactions · 0 assignees ·
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Tech Debt
AllenCell/vole-core#412 · 0 comments · 0 reactions · 0 assignees ·
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Tech Debt
AllenCell/vole-core#413 · 1 comment · 0 reactions · 0 assignees ·
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Tech Debt
AllenCell/vole-core#414 · 0 comments · 0 reactions · 0 assignees ·
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AllenCell/vole-core#417 · 0 comments · 0 reactions · 0 assignees ·
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milestone candidate
AllenCell/vole-core#433 · 0 comments · 0 reactions · 0 assignees ·
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enhancement
AllenCell/vole-core#462 · 0 comments · 0 reactions · 0 assignees ·
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AllenCell/vole-core#471 · 0 comments · 0 reactions · 0 assignees ·
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toolbar icons OpenUX
AllenCell/agave#75 · 4 comments · 0 reactions · 1 assignee ·
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UX
AllenCell/agave#76 · 0 comments · 0 reactions · 0 assignees ·
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Logo for AGAVE OpenUX
AllenCell/agave#81 · 4 comments · 0 reactions · 1 assignee ·
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AllenCell/agave#84 · 0 comments · 0 reactions · 0 assignees ·
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AllenCell/agave#91 · 0 comments · 0 reactions · 0 assignees ·
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AllenCell/agave#93 · 0 comments · 1 reaction · 0 assignees ·
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AllenCell/agave#96 · 1 comment · 0 reactions · 0 assignees ·
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AllenCell/agave#98 · 0 comments · 0 reactions · 1 assignee ·
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AllenCell/agave#100 · 0 comments · 0 reactions · 1 assignee ·
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rewrite web client Open
AllenCell/agave#111 · 0 comments · 0 reactions · 1 assignee ·
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AllenCell/agave#118 · 0 comments · 0 reactions · 0 assignees ·
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needs-spec UX
AllenCell/agave#133 · 0 comments · 0 reactions · 0 assignees ·
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needs-spec UX
AllenCell/agave#134 · 0 comments · 0 reactions · 0 assignees ·
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UX
AllenCell/agave#135 · 1 comment · 0 reactions · 1 assignee ·
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UX
AllenCell/agave#136 · 0 comments · 0 reactions · 0 assignees ·
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Undo / Redo Open
AllenCell/agave#137 · 0 comments · 0 reactions · 0 assignees ·
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UX
AllenCell/agave#143 · 0 comments · 0 reactions · 0 assignees ·
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AllenCell/agave#162 · 0 comments · 0 reactions · 0 assignees ·
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AllenCell/agave#163 · 0 comments · 0 reactions · 0 assignees ·
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AllenCell/agave#166 · 0 comments · 0 reactions · 0 assignees ·
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check for updates Open
AllenCell/agave#185 · 0 comments · 0 reactions · 0 assignees ·
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keyframing Open
AllenCell/agave#196 · 0 comments · 0 reactions · 0 assignees ·
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try c++20 Open
AllenCell/agave#227 · 0 comments · 0 reactions · 0 assignees ·
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reset Volume Scale Open
AllenCell/agave#244 · 0 comments · 0 reactions · 0 assignees ·
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AllenCell/agave#249 · 0 comments · 0 reactions · 0 assignees ·
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AllenCell/agave#250 · 1 comment · 0 reactions · 0 assignees ·
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animation Open
AllenCell/agave#252 · 2 comments · 0 reactions · 0 assignees ·
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AllenCell/agave#272 · 0 comments · 0 reactions · 0 assignees ·
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AllenCell/agave#275 · 1 comment · 0 reactions · 0 assignees ·
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bug
AllenCell/agave#276 · 0 comments · 0 reactions · 0 assignees ·
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bug
AllenCell/agave#287 · 0 comments · 0 reactions · 0 assignees ·
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AllenCell/agave#294 · 0 comments · 0 reactions · 0 assignees ·
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enhancement
AllenCell/agave#296 · 0 comments · 0 reactions · 0 assignees ·
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UX
AllenCell/agave#315 · 0 comments · 0 reactions · 0 assignees ·
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UX
AllenCell/agave#316 · 1 comment · 0 reactions · 0 assignees ·