Proprietario
AllenCell
20 repository indicizzati · Vedi su GitHub
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vole-core
core rendering canvas and data loading services for Vol-E volume viewer
TypeScript · 106 stelle
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agave
High quality visualization for volumetric image data
C++ · 62 stelle
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Python · 32 stelle
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Python · 32 stelle
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aics-segmentation
Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow
Jupyter Notebook · 26 stelle
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cvapipe_analysis
Analysis of data produced by cvapipe for the variance paper
Jupyter Notebook · 24 stelle
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Python · 24 stelle
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napari-allencell-segmenter
A plugin that enables image segmentation provided by Allen Institute for Cell Science
Python · 20 stelle
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segmenter_model_zoo
scripts and API for running Deep Learning models from segmenter
Jupyter Notebook · 10 stelle
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Python · 7 stelle
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benchmarking_representations
Benchmarking different methods for extracting unsupervised representations from images
Python · 7 stelle
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allencell-segmenter-ml
Napari plugin for ml segmentation
Python · 5 stelle
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endothelial-pipeline
Dynamics of ML-based morphological features indicate a shear stress-dependent bifurcation of hiPSC-derived endothelial cell states
Python · 2 stelle
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cell-feature-explorer
Plot and explore data that is linked to images, with an embedded viewer
TypeScript · 2 stelle
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EMT_data_analysis
This repo contains code for EMT deliverable data analysis and has dependencies associated with output from EMT_image_analysis repo.
Python · 1 stella
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Python · 0 stelle
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camera-alignment-core
Core algorithms for alignment of two-camera microscopy imagery
Python · 0 stelle
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cellpack-client
Frontend interface for cellPACK
TypeScript · 0 stelle
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cell-catalog
Cell catalog 2.0
TypeScript · 0 stelle
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TypeScript · 0 stelle
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create Model class Apertarefactor
AllenCell/allencell-segmenter-ml#500 · 0 commenti · 0 reazioni · 0 assegnatari ·
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Prediction channel selection Aperta🚨 high priority🚨 bug
AllenCell/allencell-segmenter-ml#502 · 1 commento · 0 reazioni · 1 assegnatario ·
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AllenCell/allencell-segmenter-ml#504 · 0 commenti · 0 reazioni · 1 assegnatario ·
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bug
AllenCell/allencell-segmenter-ml#505 · 0 commenti · 0 reazioni · 0 assegnatari ·
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needs clarification needs prioritization
AllenCell/allencell-segmenter-ml#506 · 0 commenti · 0 reazioni · 1 assegnatario ·
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AllenCell/allencell-segmenter-ml#509 · 1 commento · 0 reazioni · 0 assegnatari ·
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AllenCell/allencell-segmenter-ml#510 · 0 commenti · 0 reazioni · 0 assegnatari ·
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refactor
AllenCell/allencell-segmenter-ml#521 · 0 commenti · 0 reazioni · 0 assegnatari ·
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returns optional pattern Apertarefactor
AllenCell/allencell-segmenter-ml#522 · 0 commenti · 0 reazioni · 0 assegnatari ·
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refactor
AllenCell/allencell-segmenter-ml#523 · 0 commenti · 0 reazioni · 0 assegnatari ·
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🚨 high priority🚨
AllenCell/allencell-segmenter-ml#525 · 3 commenti · 0 reazioni · 2 assegnatari ·
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bug needs prioritization
AllenCell/allencell-segmenter-ml#526 · 0 commenti · 0 reazioni · 0 assegnatari ·
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bug needs prioritization
AllenCell/allencell-segmenter-ml#527 · 1 commento · 0 reazioni · 0 assegnatari ·
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test Apertaneeds prioritization Requests
AllenCell/allencell-segmenter-ml#532 · 0 commenti · 0 reazioni · 0 assegnatari ·
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Thresholding Aperta🚨 high priority🚨 Requests v1
AllenCell/allencell-segmenter-ml#533 · 0 commenti · 0 reazioni · 1 assegnatario ·
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Iterative training Aperta🚨 high priority🚨 Requests v1
AllenCell/allencell-segmenter-ml#534 · 0 commenti · 0 reazioni · 0 assegnatari ·
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fewfewfew Apertaneeds prioritization Requests
AllenCell/allencell-segmenter-ml#536 · 0 commenti · 0 reazioni · 0 assegnatari ·
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needs prioritization Requests
AllenCell/allencell-segmenter-ml#541 · 0 commenti · 0 reazioni · 0 assegnatari ·
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User docs Aperta🚨 high priority🚨
AllenCell/allencell-segmenter-ml#543 · 0 commenti · 0 reazioni · 1 assegnatario ·
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needs prioritization Requests
AllenCell/allencell-segmenter-ml#546 · 0 commenti · 0 reazioni · 0 assegnatari ·
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test Aperta
AllenCell/allencell-segmenter-ml#559 · 0 commenti · 0 reazioni · 0 assegnatari ·
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test Apertaneeds prioritization Requests
AllenCell/allencell-segmenter-ml#560 · 0 commenti · 0 reazioni · 0 assegnatari ·
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test Aperta
AllenCell/allencell-segmenter-ml#562 · 0 commenti · 0 reazioni · 0 assegnatari ·
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AllenCell/allencell-segmenter-ml#563 · 0 commenti · 0 reazioni · 0 assegnatari ·
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AllenCell/allencell-segmenter-ml#564 · 0 commenti · 0 reazioni · 0 assegnatari ·
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Testing Aperta
AllenCell/allencell-segmenter-ml#566 · 0 commenti · 0 reazioni · 0 assegnatari ·
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AllenCell/allencell-segmenter-ml#568 · 0 commenti · 0 reazioni · 0 assegnatari ·
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🚨 high priority🚨 refactor
AllenCell/allencell-segmenter-ml#578 · 0 commenti · 0 reazioni · 0 assegnatari ·
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🚨 high priority🚨 refactor
AllenCell/allencell-segmenter-ml#579 · 0 commenti · 0 reazioni · 0 assegnatari ·
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🚨 high priority🚨 refactor
AllenCell/allencell-segmenter-ml#580 · 1 commento · 0 reazioni · 1 assegnatario ·
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needs prioritization Requests
AllenCell/allencell-segmenter-ml#584 · 0 commenti · 0 reazioni · 0 assegnatari ·
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needs prioritization Requests
AllenCell/allencell-segmenter-ml#585 · 0 commenti · 0 reazioni · 0 assegnatari ·
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needs prioritization Requests
AllenCell/allencell-segmenter-ml#587 · 1 commento · 0 reazioni · 0 assegnatari ·
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needs prioritization Requests
AllenCell/allencell-segmenter-ml#588 · 2 commenti · 0 reazioni · 0 assegnatari ·
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UI/UX
AllenCell/allencell-segmenter-ml#589 · 1 commento · 0 reazioni · 1 assegnatario ·
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needs prioritization Requests
AllenCell/allencell-segmenter-ml#591 · 0 commenti · 0 reazioni · 0 assegnatari ·
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needs prioritization Requests
AllenCell/allencell-segmenter-ml#592 · 0 commenti · 0 reazioni · 0 assegnatari ·
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Clean up gh workflows Apertalow priority needs prioritization refactor
AllenCell/allencell-segmenter-ml#599 · 0 commenti · 0 reazioni · 0 assegnatari ·
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needs prioritization Requests
AllenCell/allencell-segmenter-ml#603 · 0 commenti · 0 reazioni · 0 assegnatari ·
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change overlap to .2 Apertaneeds prioritization Requests
AllenCell/allencell-segmenter-ml#604 · 0 commenti · 0 reazioni · 0 assegnatari ·
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AllenCell/allencell-segmenter-ml#605 · 1 commento · 0 reazioni · 0 assegnatari ·
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needs prioritization Requests
AllenCell/allencell-segmenter-ml#610 · 0 commenti · 0 reazioni · 0 assegnatari ·
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AllenCell/allencell-segmenter-ml#611 · 2 commenti · 0 reazioni · 0 assegnatari ·
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AllenCell/allencell-segmenter-ml#612 · 2 commenti · 0 reazioni · 0 assegnatari ·
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Support "Training Assay" Apertaneeds prioritization Requests
AllenCell/allencell-segmenter-ml#613 · 3 commenti · 0 reazioni · 0 assegnatari ·
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AllenCell/allencell-segmenter-ml#627 · 1 commento · 0 reazioni · 0 assegnatari ·
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failed to run on Windows Aperta
AllenCell/allencell-segmenter-ml#633 · 1 commento · 0 reazioni · 0 assegnatari ·
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AllenCell/allencell-segmenter-ml#634 · 0 commenti · 0 reazioni · 0 assegnatari ·
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needs prioritization Requests
AllenCell/allencell-segmenter-ml#636 · 0 commenti · 0 reazioni · 0 assegnatari ·
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Installation how-to video Apertadocumentation needs grooming
AllenCell/napari-allencell-segmenter#55 · 0 commenti · 0 reazioni · 1 assegnatario ·