Proprietario
AllenCell
20 repository indicizzati · Vedi su GitHub
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vole-core
core rendering canvas and data loading services for Vol-E volume viewer
TypeScript · 106 stelle
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agave
High quality visualization for volumetric image data
C++ · 62 stelle
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Python · 32 stelle
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Python · 32 stelle
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aics-segmentation
Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow
Jupyter Notebook · 26 stelle
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cvapipe_analysis
Analysis of data produced by cvapipe for the variance paper
Jupyter Notebook · 24 stelle
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Python · 24 stelle
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napari-allencell-segmenter
A plugin that enables image segmentation provided by Allen Institute for Cell Science
Python · 20 stelle
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segmenter_model_zoo
scripts and API for running Deep Learning models from segmenter
Jupyter Notebook · 10 stelle
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Python · 7 stelle
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benchmarking_representations
Benchmarking different methods for extracting unsupervised representations from images
Python · 7 stelle
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allencell-segmenter-ml
Napari plugin for ml segmentation
Python · 5 stelle
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endothelial-pipeline
Dynamics of ML-based morphological features indicate a shear stress-dependent bifurcation of hiPSC-derived endothelial cell states
Python · 2 stelle
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cell-feature-explorer
Plot and explore data that is linked to images, with an embedded viewer
TypeScript · 2 stelle
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EMT_data_analysis
This repo contains code for EMT deliverable data analysis and has dependencies associated with output from EMT_image_analysis repo.
Python · 1 stella
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Python · 0 stelle
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camera-alignment-core
Core algorithms for alignment of two-camera microscopy imagery
Python · 0 stelle
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cellpack-client
Frontend interface for cellPACK
TypeScript · 0 stelle
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cell-catalog
Cell catalog 2.0
TypeScript · 0 stelle
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TypeScript · 0 stelle
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bug
AllenCell/allencell-segmenter-ml#395 · 0 commenti · 0 reazioni · 1 assegnatario ·
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low priority refactor
AllenCell/allencell-segmenter-ml#399 · 0 commenti · 0 reazioni · 0 assegnatari ·
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🚨 high priority🚨
AllenCell/allencell-segmenter-ml#400 · 0 commenti · 0 reazioni · 1 assegnatario ·
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🚨 high priority🚨
AllenCell/allencell-segmenter-ml#401 · 0 commenti · 0 reazioni · 1 assegnatario ·
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🚨 high priority🚨 bug
AllenCell/allencell-segmenter-ml#402 · 0 commenti · 0 reazioni · 1 assegnatario ·
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refactor
AllenCell/allencell-segmenter-ml#404 · 0 commenti · 0 reazioni · 3 assegnatari ·
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🚨 high priority🚨
AllenCell/allencell-segmenter-ml#411 · 0 commenti · 0 reazioni · 1 assegnatario ·
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🚨 high priority🚨 bug
AllenCell/allencell-segmenter-ml#424 · 1 commento · 0 reazioni · 1 assegnatario ·
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🚨 high priority🚨
AllenCell/allencell-segmenter-ml#425 · 0 commenti · 0 reazioni · 1 assegnatario ·
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low priority
AllenCell/allencell-segmenter-ml#426 · 0 commenti · 0 reazioni · 0 assegnatari ·
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Training service tests Apertamedium priority
AllenCell/allencell-segmenter-ml#430 · 0 commenti · 0 reazioni · 1 assegnatario ·
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🚨 high priority🚨 UI/UX
AllenCell/allencell-segmenter-ml#432 · 0 commenti · 0 reazioni · 1 assegnatario ·
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UI/UX: Spacing Aperta🚨 high priority🚨 UI/UX
AllenCell/allencell-segmenter-ml#433 · 0 commenti · 0 reazioni · 1 assegnatario ·
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🚨 high priority🚨 refactor UI/UX
AllenCell/allencell-segmenter-ml#438 · 0 commenti · 0 reazioni · 1 assegnatario ·
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🚨 high priority🚨 UI/UX
AllenCell/allencell-segmenter-ml#439 · 0 commenti · 0 reazioni · 1 assegnatario ·
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🚨 high priority🚨 UI/UX
AllenCell/allencell-segmenter-ml#440 · 0 commenti · 0 reazioni · 1 assegnatario ·
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needs prioritization UI/UX
AllenCell/allencell-segmenter-ml#442 · 0 commenti · 0 reazioni · 0 assegnatari ·
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AllenCell/allencell-segmenter-ml#447 · 0 commenti · 0 reazioni · 1 assegnatario ·
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AllenCell/allencell-segmenter-ml#451 · 2 commenti · 0 reazioni · 1 assegnatario ·
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refactor
AllenCell/allencell-segmenter-ml#452 · 6 commenti · 0 reazioni · 3 assegnatari ·
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🚨 high priority🚨 bug
AllenCell/allencell-segmenter-ml#456 · 0 commenti · 0 reazioni · 1 assegnatario ·
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AllenCell/allencell-segmenter-ml#457 · 0 commenti · 0 reazioni · 1 assegnatario ·
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AllenCell/allencell-segmenter-ml#467 · 0 commenti · 0 reazioni · 1 assegnatario ·
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AllenCell/allencell-segmenter-ml#468 · 0 commenti · 0 reazioni · 1 assegnatario ·
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🚨 high priority🚨 bug wontfix
AllenCell/allencell-segmenter-ml#469 · 7 commenti · 0 reazioni · 2 assegnatari ·
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refactor
AllenCell/allencell-segmenter-ml#470 · 0 commenti · 0 reazioni · 0 assegnatari ·
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🚨 high priority🚨 needs clarification
AllenCell/allencell-segmenter-ml#475 · 1 commento · 0 reazioni · 1 assegnatario ·
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Reformat make file Aperta
AllenCell/allencell-segmenter-ml#484 · 0 commenti · 0 reazioni · 1 assegnatario ·
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AllenCell/allencell-segmenter-ml#490 · 0 commenti · 0 reazioni · 1 assegnatario ·
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Check for compatible cuda and pytorch version and show dialog box with instructions if needed Aperta🚨 high priority🚨
AllenCell/allencell-segmenter-ml#491 · 0 commenti · 0 reazioni · 1 assegnatario ·
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Model metadata Aperta🚨 high priority🚨 UI/UX
AllenCell/allencell-segmenter-ml#492 · 0 commenti · 0 reazioni · 0 assegnatari ·
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🚨 high priority🚨
AllenCell/allencell-segmenter-ml#493 · 0 commenti · 0 reazioni · 1 assegnatario ·
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🚨 high priority🚨 needs clarification
AllenCell/allencell-segmenter-ml#494 · 0 commenti · 0 reazioni · 1 assegnatario ·
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Thresholding UI Aperta🚨 high priority🚨 UI/UX
AllenCell/allencell-segmenter-ml#495 · 0 commenti · 0 reazioni · 1 assegnatario ·
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Create a cytoparam class Apertaenhancement
AllenCell/aics-cytoparam#3 · 0 commenti · 0 reazioni · 1 assegnatario ·
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Replace mem and dna aliases Apertaenhancement
AllenCell/aics-cytoparam#4 · 0 commenti · 0 reazioni · 1 assegnatario ·
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AllenCell/benchmarking_representations#71 · 2 commenti · 0 reazioni · 1 assegnatario ·
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AllenCell/benchmarking_representations#87 · 0 commenti · 0 reazioni · 1 assegnatario ·
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AllenCell/benchmarking_representations#88 · 0 commenti · 0 reazioni · 1 assegnatario ·
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AllenCell/benchmarking_representations#93 · 2 commenti · 0 reazioni · 0 assegnatari ·
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documentation
AllenCell/segmenter_model_zoo#10 · 2 commenti · 0 reazioni · 1 assegnatario ·
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WIP
AllenCell/segmenter_model_zoo#14 · 6 commenti · 0 reazioni · 1 assegnatario ·
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enhancement
AllenCell/aics-ml-segmentation#5 · 0 commenti · 0 reazioni · 2 assegnatari ·
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enhancement
AllenCell/aics-ml-segmentation#6 · 0 commenti · 0 reazioni · 1 assegnatario ·
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enhancement
AllenCell/aics-ml-segmentation#7 · 0 commenti · 1 reazione · 1 assegnatario ·
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add model unet_xy_zoom_pad Apertaenhancement
AllenCell/aics-ml-segmentation#8 · 0 commenti · 0 reazioni · 1 assegnatario ·
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add documentation Apertadocumentation
AllenCell/aics-ml-segmentation#9 · 0 commenti · 0 reazioni · 2 assegnatari ·
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new sliding window inference Apertaenhancement
AllenCell/aics-ml-segmentation#10 · 0 commenti · 0 reazioni · 1 assegnatario ·
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AllenCell/aics-ml-segmentation#13 · 0 commenti · 0 reazioni · 0 assegnatari ·
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update README Aperta
AllenCell/allencell-segmenter-ml#497 · 1 commento · 0 reazioni · 4 assegnatari ·