AllenCell / AllenCell/allencell-segmenter-ml
Patch size grid artifact in segmentation mask output
- Dominant language
- Python
- Stars
- 5
- Forks
- 3
- PR merge metrics
- No merged PRs in 30d
Description
Megaseg model patch size edges not being blended so grid artifacts present in output masks.
**How important is this feature to you? (Software team will re-prioritize all tickets based on current workload)**
high priority bug since it introduces artifacts in structure segmentation mask.
**Describe the solution you'd like**
Easiest thing would be to make a checkbox to set the patch size to the whole fov xyz dims so these artifacts go away. Could also work on optimizing the fusing/blending of edge overlap areas so that output segmentation masks don't have these artifacts.
**Additional context**
Add any other context or screenshots about the feature request here.

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