AllenCell / AllenCell/allencell-segmenter-ml

Training/Prediction Demo

未关闭
#309 2 条评论 0 个 reaction 已指派 1 人 已被 @amilworks 认领 在 GitHub 查看
主要语言
Python
星标
5
派生
3
PR 合并指标
30 天内没有已合并 PR

描述

We want to be able to demo the plugin at a friday meeting, either on 5/17 or 5/24.
@benjijamorris has already fine-tuned some parameters for the variance dataset, and has been able to achieve good segmentation results through the API.

We need to be able prove we can replicate that through the plugin on a windows workstation. This is what we need for the demo:

1. Models trained through the plugin that are able to give good segmentation results. We need good models for multiple (2+) variance datasets.
2. demo of models doing prediction, either through screen captured video or live.
3. parameters used to train the models, for reproducibility.

We have a windows workstation ready for @amilworks, and you could start by testing version `0.1.1.dev0` on artifactory (available w/ `pip install --index-url https://artifactory.corp.alleninstitute.org/artifactory/api/pypi/pypi-virtual/simple allencell-ml-segmenter==0.1.1.dev0` while connected to vpn). We'll release another version later in the week with user-defined patch sizes which we can install when ready.

贡献指南

这个仓库没有索引到贡献指南

评估

这个 Issue 还没有评估数据。

把新 issue 发到你的邮箱

精选适合新手参与的 GitHub issue 摘要。