Owner

AllTheBacteria

2 indexed repositories · View on GitHub

atb-cli
All The Bacteria CLI — query 3.2M bacterial genomes (AMR, MLST, assemblies, metadata) from the terminal

Go · 35 stars
ATB_website

Astro · 2 stars

Beginner friendly Everything

Open All

atb download --from <file> --output-dir . does not work from mlst manifest Open

Difficulty 3/5 1-2 days Newbie friendliness 66/100

AllTheBacteria/atb-cli#27 · 2 comments · Opened Jul 3, 2026
atb query --species does not appear to work for all species Open

Difficulty 3/5 1-2 days Newbie friendliness 62/100

AllTheBacteria/atb-cli#25 · 7 comments · Opened Jul 2, 2026
Generate RTD for atb-cli document Open

Difficulty 3/5 1-2 days Newbie friendliness 52/100

AllTheBacteria/atb-cli#21 · 1 comment · Opened Jun 19, 2026
How do i update the databses? Open

Difficulty 2/5 1-3 hours Newbie friendliness 55/100

AllTheBacteria/atb-cli#16 · 1 comment · Opened May 24, 2026
Update MLST docs Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

AllTheBacteria/ATB_website#8 · Opened Apr 7, 2026

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