AllTheBacteria / AllTheBacteria/atb-cli
atb query --species does not appear to work for all species
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- Go
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Description
Tested:
atb query --species "Sulfolobus acidocaldarius"
Expected:
A list of around 58 Sulfolobus acidocaldarius assemblies
58 are listed on NCBI Genomes: https://www.ncbi.nlm.nih.gov/datasets/genome/?taxon=2285
Result:
0 result(s)
Also tested Saccharolobus islandicus and Haloferax volcanii
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Research direction
Start by reproducing the issue with atb query --species "Sulfolobus acidocaldarius", then compare the species-filtering query results with the NCBI Genome count cited in the report. Check the same behavior for Saccharolobus islandicus and Haloferax volcanii. Done means the command returns the expected assemblies for these species rather than zero results.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- go
- Domain
- cli, search
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Quiet
- Clarity
- Mostly clear
- Newbie friendliness
- 62/100