Owner
shenwei356
5 indexed repositories · View on GitHub
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seqkit
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
Go · 1593 stars
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csvtk
A cross-platform, efficient and practical CSV/TSV toolkit in Golang
Go · 1170 stars
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rush
A cross-platform command-line tool for executing jobs in parallel
Go · 1134 stars
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taxonkit
A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV
Go · 481 stars
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LexicMap
LexicMap: efficient sequence alignment against millions of prokaryotic genomes
Go · 227 stars
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Difficulty 2/5 1-3 hours Newbie friendliness 68/100
shenwei356/rush#78 · 1 comment ·
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Difficulty 3/5 1-2 days Newbie friendliness 66/100
shenwei356/rush#77 · 1 comment ·
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Difficulty 2/5 1-3 hours Newbie friendliness 70/100
shenwei356/csvtk#370 · 1 comment ·
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Difficulty 5/5 Over a week Newbie friendliness 35/100
shenwei356/LexicMap#35 · 1 comment ·
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Difficulty 4/5 3-5 days Newbie friendliness 35/100
shenwei356/rush#75 · 1 comment · 1 reaction ·
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Difficulty 5/5 Over a week Newbie friendliness 30/100
shenwei356/taxonkit#125 · 2 comments ·
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Difficulty 5/5 Over a week Newbie friendliness 20/100
shenwei356/LexicMap#29 · 2 comments ·
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Difficulty 3/5 1-2 days Newbie friendliness 48/100
shenwei356/csvtk#357 · 1 comment ·
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Difficulty 5/5 Over a week Newbie friendliness 25/100
shenwei356/LexicMap#27 · 5 comments ·
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Difficulty 4/5 3-5 days Newbie friendliness 25/100
shenwei356/taxonkit#123 · 1 comment ·
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SAM format output? Open
Difficulty 5/5 Over a week Newbie friendliness 30/100
shenwei356/LexicMap#26 · 21 comments ·
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Difficulty 5/5 Over a week Newbie friendliness 35/100
shenwei356/csvtk#320 · 6 comments ·
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Difficulty 4/5 3-5 days Newbie friendliness 30/100
shenwei356/taxonkit#111 · 2 comments ·
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Difficulty 4/5 3-5 days Newbie friendliness 25/100
shenwei356/rush#67 · 1 comment ·
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Difficulty 5/5 Over a week Newbie friendliness 42/100
shenwei356/rush#65 · 1 comment ·
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Difficulty 4/5 3-5 days Newbie friendliness 35/100
shenwei356/taxonkit#109 · 5 comments ·
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Difficulty 1/5 Under an hour Newbie friendliness 25/100
shenwei356/LexicMap#10 ·
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TODO list Open
Difficulty 5/5 Over a week Newbie friendliness 25/100
shenwei356/LexicMap#5 · 2 comments ·
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Difficulty 4/5 3-5 days Newbie friendliness 35/100
shenwei356/seqkit#477 · 4 comments ·
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Difficulty 5/5 Over a week Newbie friendliness 28/100
shenwei356/seqkit#475 · 4 comments · 1 reaction ·
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enhancement new feature
Difficulty 3/5 1-2 days Newbie friendliness 45/100
shenwei356/taxonkit#93 · 6 comments ·
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Difficulty 3/5 1-2 days Newbie friendliness 42/100
shenwei356/rush#56 · 7 comments ·
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enhancement
Difficulty 4/5 3-5 days Newbie friendliness 25/100
shenwei356/seqkit#443 · 5 comments ·
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Difficulty 4/5 3-5 days Newbie friendliness 25/100
shenwei356/taxonkit#91 · 5 comments ·
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enhancement
Difficulty 3/5 1-2 days Newbie friendliness 35/100
shenwei356/csvtk#266 · 1 comment ·
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Difficulty 5/5 Over a week Newbie friendliness 20/100
shenwei356/rush#55 · 2 comments · 1 reaction ·
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Better name? Open
Difficulty 5/5 Over a week Newbie friendliness 25/100
shenwei356/rush#53 · 2 comments · 1 reaction ·
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new feature
Difficulty 4/5 3-5 days Newbie friendliness 38/100
shenwei356/taxonkit#88 · 3 comments ·
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Difficulty 4/5 3-5 days Newbie friendliness 45/100
shenwei356/rush#52 · 3 comments ·
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Difficulty 5/5 Over a week Newbie friendliness 25/100
shenwei356/taxonkit#86 · 3 comments ·
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Seqkit on MultiQC Open
Difficulty 5/5 Over a week Newbie friendliness 25/100
shenwei356/seqkit#377 · 1 comment · 3 reactions ·
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Difficulty 4/5 3-5 days Newbie friendliness 35/100
shenwei356/taxonkit#59 · 2 comments ·
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enhancement low priority
Difficulty 4/5 3-5 days Newbie friendliness 35/100
shenwei356/csvtk#172 · 8 comments · 2 reactions ·
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Update benchmarks Open
Difficulty 2/5 1-3 hours Newbie friendliness 35/100
shenwei356/taxonkit#47 ·
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low priority new command
Difficulty 3/5 1-2 days Newbie friendliness 35/100
shenwei356/csvtk#139 · 9 comments ·
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enhancement
Difficulty 4/5 3-5 days Newbie friendliness 38/100
shenwei356/seqkit#191 · 5 comments ·
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enhancement
Difficulty 5/5 Over a week Newbie friendliness 25/100
shenwei356/seqkit#177 · 2 comments · 2 reactions ·
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enhancement
Difficulty 5/5 Over a week Newbie friendliness 25/100
shenwei356/rush#22 · 8 comments · 4 reactions ·