scverse/squidpy

Spatial Single Cell Analysis in Python

Stars: 598
Forks: 121
Open beginner issues: 0
Indexed issues: 79
Avg merge: 3d 11h
Merged PRs (30d): 3

Dominant language: Python
License: BSD-3-Clause
Last GitHub push: Sep 10, 2026
Latest indexed: Sep 19, 2026
Contributing guide: Contributing guide
Code of conduct: Code of conduct
Beginner labels: good first issue

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1 beginner-friendly issue open

Incorrect dataset link for `Analyze Xenium data` tutorial Open

Difficulty 1/5 Under an hour Newbie friendliness 68/100

scverse/squidpy#1049 · 4 comments · Opened Oct 23, 2025

A short digest of beginner-friendly GitHub issues.