scverse/scvi-tools
View on GitHubDeep probabilistic analysis of single-cell and spatial omics data
- Stars
- 1.7k
- Forks
- 474
- Open beginner issues
- 0
- Indexed issues
- 13
- Avg merge
- 6h 50m
- Merged PRs (30d)
- 35
- Dominant language
- Python
- License
- BSD-3-Clause
- Last GitHub push
- Sep 10, 2026
- Latest indexed
- Sep 19, 2026
- Contributing guide
- No contributing guide
- Code of conduct
- Code of conduct
- Beginner labels
- help wanted
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bug
Difficulty 3/5 1-2 days Newbie friendliness 74/100
scverse/scvi-tools#4022 ·
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Difficulty 4/5 3-5 days Newbie friendliness 72/100
scverse/scvi-tools#3977 · 2 comments ·
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enhancement
Difficulty 5/5 Over a week Newbie friendliness 35/100
scverse/scvi-tools#3839 · 1 comment · 1 reaction ·
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bug
Difficulty 4/5 3-5 days Newbie friendliness 48/100
scverse/scvi-tools#3834 · 4 comments ·
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enhancement
Difficulty 5/5 Over a week Newbie friendliness 38/100
scverse/scvi-tools#3759 · 3 comments ·
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enhancement
Difficulty 4/5 3-5 days Newbie friendliness 35/100
scverse/scvi-tools#3647 · 1 comment ·
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enhancement P1
scverse/scvi-tools#2736 · 4 comments · 1 assignee ·
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bug P0
scverse/scvi-tools#2616 · 4 comments · 1 assignee ·
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enhancement P1
Difficulty 5/5 Over a week Newbie friendliness 25/100
scverse/scvi-tools#2257 · 8 comments ·
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backlog enhancement new model
scverse/scvi-tools#1859 · 4 comments · 1 assignee ·
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Finalize scBasset Openbacklog enhancement help wanted
Difficulty 4/5 3-5 days Newbie friendliness 25/100
scverse/scvi-tools#1840 · 4 comments · 2 reactions ·
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data enhancement P2
Difficulty 5/5 Over a week Newbie friendliness 30/100
scverse/scvi-tools#1789 · 3 comments · 2 reactions ·
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enhancement P2
Difficulty 4/5 3-5 days Newbie friendliness 35/100
scverse/scvi-tools#1038 · 6 comments ·