Owner
scipion-em
20 indexed repositories · View on GitHub
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scipion-em-tomo
Base tomography Scipion plugin with data model definition
Python · 9 stars
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scipion-em
Base Scipion plugin defining objects and protocols for EM
Python · 8 stars
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scipion-pyworkflow
Underlying pyworkflow module for the Scipion framework
Python · 5 stars
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scipion-em-smartscope
Plugin to manage the interaction with the SmartScope framework.
Python · 4 stars
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scipion-em-relion
Plugin to use Relion SPA programs within the Scipion framework
Python · 3 stars
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scipion-em-reliontomo
Plugin to use Relion tomography programs within the Scipion framework
Python · 2 stars
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scipion-em-phenix
wrappers for phenix package
Python · 2 stars
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scipion-em-cryosparc2
Plugin to use cryoSPARC2 programs within the Scipion framework
Python · 2 stars
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scipion-em-imod
Plugin to use some of the Tomography tools from IMOD in Scipion
Python · 2 stars
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scipion-em-emantomo
Plugin to use Eman2 tomography programs within the Scipion framework
Python · 2 stars
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scipion-em-chimera
Plugin to use Chimera programs within the Scipion framework
Python · 2 stars
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scipion-em-dynamo
Dynamo tomography plugin for Scipion
Python · 1 star
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Python · 1 star
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scipion-em-motioncorr
Plugin to use Motioncor program within the Scipion framework
Python · 1 star
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scipion-em-aretomo
Plugin to use AreTomo within the Scipion framework
Python · 1 star
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Python · 1 star
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docs
Scipion documentation repository
Python · 1 star
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scipion-em-gapstop
Plugin to use Gapstop_TM in Scipion
Python · 0 stars
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scipion-em-warp
Plugin to use Warp programs within the Scipion framework
Python · 0 stars
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scipion-em-sphire
Plugin to use Sphire programs within the Scipion framework
Python · 0 stars
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Difficulty 2/5 1-3 hours Newbie friendliness 84/100
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Difficulty 4/5 3-5 days Newbie friendliness 55/100
scipion-em/scipion-pyworkflow#634 ·
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Difficulty 4/5 3-5 days Newbie friendliness 45/100
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Difficulty 3/5 1-2 days Newbie friendliness 55/100
scipion-em/scipion-em-reliontomo#139 · 1 comment ·
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Difficulty 2/5 1-3 hours Newbie friendliness 68/100
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bug
Difficulty 3/5 1-2 days Newbie friendliness 35/100
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Difficulty 4/5 3-5 days Newbie friendliness 35/100
scipion-em/scipion-em-imod#363 ·
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Difficulty 3/5 1-2 days Newbie friendliness 48/100
scipion-em/scipion-em-aretomo#129 · 2 comments ·
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Difficulty 3/5 1-2 days Newbie friendliness 48/100
scipion-em/scipion-em-imod#362 ·
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Difficulty 2/5 1-3 hours Newbie friendliness 45/100
scipion-em/scipion-em-motioncorr#132 · 4 comments ·
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bug
Difficulty 4/5 3-5 days Newbie friendliness 35/100
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bug
Difficulty 2/5 1-3 hours Newbie friendliness 65/100
scipion-em/scipion-em#606 ·
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enhancement
Difficulty 4/5 3-5 days Newbie friendliness 42/100
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Difficulty 3/5 1-2 days Newbie friendliness 35/100
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scipion-em/scipion-em#598 · 2 assignees ·
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enhancement
Difficulty 4/5 3-5 days Newbie friendliness 25/100
scipion-em/scipion-em-hax#12 ·
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Difficulty 3/5 1-2 days Newbie friendliness 52/100
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Difficulty 2/5 1-3 hours Newbie friendliness 68/100
scipion-em/scipion-em-imod#349 ·
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scipion-em/scipion-pyworkflow#615 · 3 comments · 1 assignee ·
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Difficulty 5/5 Over a week Newbie friendliness 25/100
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Difficulty 3/5 1-2 days Newbie friendliness 35/100
scipion-em/scipion-em-relion#438 ·
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Difficulty 3/5 1-2 days Newbie friendliness 45/100
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Difficulty 3/5 1-2 days Newbie friendliness 45/100
scipion-em/scipion-em-tomo#619 ·
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Difficulty 4/5 3-5 days Newbie friendliness 42/100
scipion-em/scipion-em-imod#337 · 3 comments ·
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scipion-em/scipion-pyworkflow#610 · 6 comments · 2 assignees ·
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Difficulty 4/5 3-5 days Newbie friendliness 35/100
scipion-em/scipion-em-relion#437 ·
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Difficulty 2/5 1-3 hours Newbie friendliness 45/100
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Difficulty 3/5 1-2 days Newbie friendliness 45/100
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scipion-em/scipion-em-emantomo#132 · 1 comment · 1 assignee ·
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Difficulty 5/5 Over a week Newbie friendliness 25/100
scipion-em/scipion-em-tomo#600 · 5 comments ·
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Difficulty 3/5 1-2 days Newbie friendliness 35/100
scipion-em/scipion-pyworkflow#595 ·
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scipion-em/scipion-em-relion#436 · 1 comment · 1 assignee ·
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Difficulty 5/5 Over a week Newbie friendliness 15/100
scipion-em/scipion-em-sphire#133 ·
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Difficulty 4/5 3-5 days Newbie friendliness 25/100
scipion-em/scipion-em-dynamo#105 · 1 comment ·
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Difficulty 5/5 Over a week Newbie friendliness 20/100
scipion-em/scipion-em-tomo#586 ·
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Difficulty 5/5 Over a week Newbie friendliness 20/100
scipion-em/scipion-em#556 ·
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question
scipion-em/scipion-em-motioncorr#115 · 4 comments · 1 assignee ·
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scipion-em/scipion-em-reliontomo#118 · 1 comment · 2 reactions · 1 assignee ·
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add imod 5.1 support Open
Difficulty 4/5 3-5 days Newbie friendliness 25/100
scipion-em/scipion-em-imod#312 · 1 comment ·
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Difficulty 4/5 3-5 days Newbie friendliness 25/100
scipion-em/scipion-em#551 · 3 comments ·
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bug
Difficulty 3/5 1-2 days Newbie friendliness 35/100
scipion-em/scipion-em-imod#308 ·
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Difficulty 3/5 1-2 days Newbie friendliness 35/100
scipion-em/scipion-em-relion#430 · 5 comments ·
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scipion-em/scipion-em-cryosparc2#175 · 2 assignees ·
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scipion-em/scipion-em-cryosparc2#174 · 2 assignees ·
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scipion-em/scipion-em-tomo#560 · 1 assignee ·
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Difficulty 2/5 1-3 hours Newbie friendliness 35/100
scipion-em/scipion-em-tomo#557 ·
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Difficulty 5/5 Over a week Newbie friendliness 20/100
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flex mesh prepare Open
scipion-em/scipion-em-cryosparc2#171 · 2 comments · 2 assignees ·
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Difficulty 4/5 3-5 days Newbie friendliness 20/100
scipion-em/scipion-pyworkflow#577 · 1 comment ·
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scipion-em/scipion-em#546 · 1 assignee ·
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