salilab/imp

View on GitHub

The Integrative Modeling Platform

Stars: 81
Forks: 34
Open beginner issues: 0
Indexed issues: 63

Dominant language: C++
License: GPL-3.0
Last GitHub push: Sep 19, 2026
Latest indexed: Sep 19, 2026
Contributing guide: Contributing guide
Code of conduct: Code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

Beginner friendly Everything

Open All

63 open issues indexed

Add Python pickle buffer support Open

performance

salilab/imp#1080 · 1 assignee · Opened Mar 30, 2023
IMP/pmi returns type error during RB construction Open

salilab/imp#1074 · 4 comments · 1 assignee · Opened Nov 22, 2022
SampledDensityMap - Which constructor is chosen affects results. Open

bug IMP.em

salilab/imp#1036 · 3 comments · 1 assignee · Opened Nov 9, 2020
Missing volume estimates for nucleic acids Open

feature request IMP.atom

salilab/imp#1027 · 1 assignee · Opened Dec 9, 2019
RWMC fails for bounded Nuisances with defined score at the boundary Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

salilab/imp#1023 · Opened Sep 8, 2019
Introduce families of distributions and a `DistributionRestraint` Open

feature request

Difficulty 5/5 Over a week Newbie friendliness 20/100

salilab/imp#1021 · Opened Sep 7, 2019
Raise exception when derivatives are requested from non-differentiable restraint Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

salilab/imp#1020 · Opened Sep 7, 2019
GSL simplex error when using high pixel size in EM2D Open

salilab/imp#1014 · 1 assignee · Opened May 24, 2019
Add SingletonDerivativeModifier complement to TransformationSymmetry Open

feature request

salilab/imp#1011 · 1 assignee · Opened Sep 26, 2018
Add interface to NAMD Open

feature request

salilab/imp#1010 · 4 comments · 1 assignee · Opened Sep 20, 2018
Reimplement Nuisance to sample in an unconstrained space Open

feature request IMP.isd

salilab/imp#1007 · 3 comments · 1 assignee · Opened Aug 9, 2018
Truncate IMP.isd.GaussianRestraint and IMP.isd.StudentTRestraint properly Open

IMP.isd

salilab/imp#1006 · 1 assignee · Opened Jul 30, 2018
SampledDensityMap - Model and map generated from model do not align. Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 35/100

salilab/imp#1002 · 1 comment · Opened Apr 3, 2018
XLs restraint: stat file reports only the likelihood as score Open

Difficulty 4/5 3-5 days Newbie friendliness 30/100

salilab/imp#1000 · 1 comment · Opened Feb 9, 2018
error in CloseBipartitePairContainer when including pairs on same rigid body Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 55/100

salilab/imp#998 · Opened Nov 17, 2017
missing density band when using SampledDensityMaps Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

salilab/imp#987 · Opened Jul 31, 2017
Track provenance information for all modeling inputs Open

feature request

salilab/imp#976 · 1 comment · 1 assignee · Opened Apr 18, 2017
Consider using DCD or other formats for trajectories Open

feature request

salilab/imp#964 · 1 assignee · Opened Sep 30, 2016
Speed up release build Open

feature request performance

salilab/imp#963 · 1 comment · 1 assignee · Opened Sep 14, 2016
IMP.em.FitRestraint is much slower with use_rigid_bodies = True Open

performance

Difficulty 4/5 3-5 days Newbie friendliness 45/100

salilab/imp#954 · Opened Jun 29, 2016
Add an IMP.atom.get_leaves(hier) which is aware of representations Open

Difficulty 3/5 1-2 days Newbie friendliness 45/100

salilab/imp#947 · Opened May 8, 2016
Overload RotamerCalculator.get_rotamer() to take ResidueType and necessary coordinate elements Open

feature request

salilab/imp#936 · 1 assignee · Opened Feb 17, 2016
Representation decorator needs a base_type Open

IMP.atom

Difficulty 4/5 3-5 days Newbie friendliness 25/100

salilab/imp#918 · 1 comment · Opened Jan 11, 2016
Density sampling and EM projections not working as expected Open

Difficulty 4/5 3-5 days Newbie friendliness 30/100

salilab/imp#915 · 3 comments · Opened Nov 5, 2015
Use standard CMake macros to generate export headers Open

feature request

salilab/imp#912 · 1 assignee · Opened Sep 8, 2015
Try to get away from linking source files into the build directory Open

build system

salilab/imp#909 · 1 assignee · Opened Aug 14, 2015
Backtransform derivatives on symmetry particles Open

salilab/imp#908 · 1 assignee · Opened Aug 5, 2015
Don't use deprecated CGAL triangulation functionality Open

feature request

salilab/imp#904 · 3 comments · 1 assignee · Opened Jun 26, 2015
hierarchy test fail should occur also at rmf writing and not at rmf reading only Open

IMP.rmf

Difficulty 3/5 1-2 days Newbie friendliness 35/100

salilab/imp#867 · Opened Feb 9, 2015
RMF parallel read/write Open

feature request

Difficulty 5/5 Over a week Newbie friendliness 20/100

salilab/imp#857 · Opened Dec 4, 2014
Speed up SampledDensityMap by taking advantage of separability Open

feature request

Difficulty 4/5 3-5 days Newbie friendliness 35/100

salilab/imp#849 · 1 comment · Opened Nov 23, 2014
IMP_SWIG_WRAPPER doesn't work on Windows Open

salilab/imp#844 · 1 assignee · Opened Nov 19, 2014
Speed up SWIG wrappers by pruning dependencies Open

salilab/imp#841 · 1 assignee · Opened Oct 27, 2014
Speed up creation of CHARMM dihedrals Open

IMP.atom

salilab/imp#833 · 1 assignee · Opened Oct 2, 2014
Investigate parallelizing trivially parallelizable restraints Open

performance

salilab/imp#832 · 1 comment · 1 assignee · Opened Oct 2, 2014
SampledDensityMap should natively handle core::Gaussians Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

salilab/imp#820 · 3 comments · Opened Sep 16, 2014
Running Multifit without providing enough information to fill the volume Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

salilab/imp#803 · 2 comments · Opened Jul 2, 2014
Add MD support to rigid bodies Open

feature request IMP.core

salilab/imp#790 · 13 comments · 1 assignee · Opened Apr 21, 2014
"Friend" hierarchies Open

feature request

Difficulty 5/5 Over a week Newbie friendliness 25/100

salilab/imp#783 · 3 comments · Opened Apr 10, 2014
Make IMP::atom::transform aware of Representation nodes Open

bug IMP.atom

Difficulty 4/5 3-5 days Newbie friendliness 25/100

salilab/imp#764 · Opened Mar 6, 2014
Add decorator/selection support for Symmetric units Open

feature request

Difficulty 5/5 Over a week Newbie friendliness 15/100

salilab/imp#752 · Opened Feb 26, 2014
Identify the lists of particles used for RigidBody sphere trees using a hash Open

feature request

Difficulty 4/5 3-5 days Newbie friendliness 30/100

salilab/imp#740 · Opened Feb 16, 2014
Make core::ExcludeBody use grids for rigid bodies Open

feature request

Difficulty 4/5 3-5 days Newbie friendliness 25/100

salilab/imp#718 · 2 comments · Opened Jan 30, 2014
Code that uses rigid bodies maybe should walk all the way up to root of rigid bodies Open

feature request

Difficulty 5/5 Over a week Newbie friendliness 20/100

salilab/imp#704 · Opened Jan 23, 2014
cleanup Modifier, Predicate and Score method names Open

feature request

Difficulty 4/5 3-5 days Newbie friendliness 35/100

salilab/imp#645 · Opened Dec 10, 2013
Make sure NAMED_TUPLE works with algebraic types Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 35/100

salilab/imp#597 · Opened Nov 6, 2013
Write all IMP particle attributes to RMF file Open

feature request

Difficulty 4/5 3-5 days Newbie friendliness 30/100

salilab/imp#584 · 1 comment · Opened Oct 28, 2013
Use IMP.base flags support in all applications Open

feature request

Difficulty 3/5 1-2 days Newbie friendliness 45/100

salilab/imp#579 · Opened Oct 25, 2013
Run clang-modernize on IMP once we can turn on c++-11 Open

feature request

Difficulty 4/5 3-5 days Newbie friendliness 25/100

salilab/imp#562 · 1 comment · Opened Oct 6, 2013
Add move support to Pointer Open

feature request

Difficulty 4/5 3-5 days Newbie friendliness 25/100

salilab/imp#510 · 1 comment · Opened Sep 8, 2013

salilab/imp

Get new issues in your inbox