Project with _tests_ breaks when used with a plugin combo of `war` and `liberty` with gradle.

A plain gradle webapp project with war plugin that has tests will completely break in vscode the moment the plugin id "io.openliberty.tools.gradle.Liberty" version "3.1-SNAPSHOT" is introduced into the build. Autocompletion dies, errors appear on every class there is in the main and test trees. If the plugin is removed, it goes back to normal. Alternatively, If the src/test folder is removed and liberty plugin kept, project goes back to normal.

From command line, everything is normal, project builds/tests without issues.

Environment

• Operating System: Ubuntu 20.04.1 LTS
• JDK version: 14 - Oracle and openjdk
• Visual Studio Code version: latest
• Java extension version: latest
• With Gradle 6.6

Steps To Reproduce

1. Make a new gradle webapp project with the war plugin.
2. Add some plain junit test.
3. Introduce the io.openliberty.tools.gradle.Liberty to the build.
4. Everything breaks in vscode, but can run the build from command line (build, test, etc).
5. Remove the war and its place add java-library plugin and in vscode everything returns to normal.
6. Alternatively to 5, keep the war plugin and remove the src/test folder and in vscode everything return to normal.

Error taken from the Output of Language Support for Java:

WARNING: Using incubator modules: jdk.incubator.foreign, jdk.incubator.jpackage
[Error - 6:15:59 PM] Aug 20, 2020, 6:15:59 PM Failed to configure project war-liberty-sample
Test source folder 'src/test/java' in project 'war-liberty-sample' must have an output folder that is not also used for main sources
Java Model Exception: Java Model Status [Test source folder 'src/test/java' in project 'war-liberty-sample' must have an output folder that is not also used for main sources]
	at org.eclipse.jdt.internal.core.JavaModelOperation.runOperation(JavaModelOperation.java:798)
	at org.eclipse.jdt.internal.core.JavaProject.setRawClasspath(JavaProject.java:3608)
	at org.eclipse.jdt.internal.core.JavaProject.setRawClasspath(JavaProject.java:3568)
	at org.eclipse.jdt.internal.core.JavaProject.setRawClasspath(JavaProject.java:3624)
	at org.eclipse.buildship.core.internal.workspace.SourceFolderUpdater.updateSourceFolders(SourceFolderUpdater.java:71)
	at org.eclipse.buildship.core.internal.workspace.SourceFolderUpdater.update(SourceFolderUpdater.java:169)
	at org.eclipse.buildship.core.internal.workspace.BaseConfigurator.synchronizeJavaProjectInTransaction(BaseConfigurator.java:116)
	at org.eclipse.buildship.core.internal.workspace.BaseConfigurator.access$000(BaseConfigurator.java:40)
	at org.eclipse.buildship.core.internal.workspace.BaseConfigurator$1.run(BaseConfigurator.java:105)
	at org.eclipse.jdt.internal.core.BatchOperation.executeOperation(BatchOperation.java:41)
	at org.eclipse.jdt.internal.core.JavaModelOperation.run(JavaModelOperation.java:736)
	at org.eclipse.core.internal.resources.Workspace.run(Workspace.java:2292)
	at org.eclipse.core.internal.resources.Workspace.run(Workspace.java:2317)
	at org.eclipse.jdt.core.JavaCore.run(JavaCore.java:5895)
	at org.eclipse.jdt.core.JavaCore.run(JavaCore.java:5852)
	at org.eclipse.buildship.core.internal.workspace.BaseConfigurator.synchronizeJavaProject(BaseConfigurator.java:101)
	at org.eclipse.buildship.core.internal.workspace.BaseConfigurator.configure(BaseConfigurator.java:91)
	at org.eclipse.buildship.core.internal.workspace.BaseConfigurator.configure(BaseConfigurator.java:66)
	at org.eclipse.buildship.core.internal.extension.InternalProjectConfigurator.configure(InternalProjectConfigurator.java:65)
	at org.eclipse.buildship.core.internal.workspace.ProjectConfigurators.configureConfigurators(ProjectConfigurators.java:70)
	at org.eclipse.buildship.core.internal.workspace.SynchronizeGradleBuildOperation.synchronizeOpenWorkspaceProject(SynchronizeGradleBuildOperation.java:163)
	at org.eclipse.buildship.core.internal.workspace.SynchronizeGradleBuildOperation.synchronizeWorkspaceProject(SynchronizeGradleBuildOperation.java:137)
	at org.eclipse.buildship.core.internal.workspace.SynchronizeGradleBuildOperation.synchronizeGradleProjectWithWorkspaceProject(SynchronizeGradleBuildOperation.java:127)
	at org.eclipse.buildship.core.internal.workspace.SynchronizeGradleBuildOperation.access$000(SynchronizeGradleBuildOperation.java:42)
	at org.eclipse.buildship.core.internal.workspace.SynchronizeGradleBuildOperation$1.run(SynchronizeGradleBuildOperation.java:85)
	at org.eclipse.core.internal.resources.Workspace.run(Workspace.java:2292)
	at org.eclipse.core.internal.resources.Workspace.run(Workspace.java:2312)
	at org.eclipse.buildship.core.internal.workspace.SynchronizeGradleBuildOperation.synchronizeProjectsWithWorkspace(SynchronizeGradleBuildOperation.java:82)
	at org.eclipse.buildship.core.internal.workspace.SynchronizeGradleBuildOperation.run(SynchronizeGradleBuildOperation.java:64)
	at org.eclipse.buildship.core.internal.DefaultGradleBuild$SynchronizeOperation.runInToolingApi(DefaultGradleBuild.java:230)
	at org.eclipse.buildship.core.internal.operation.DefaultToolingApiOperationManager$WorkspaceRunnableAdapter.run(DefaultToolingApiOperationManager.java:58)
	at org.eclipse.core.internal.resources.Workspace.run(Workspace.java:2292)
	at org.eclipse.core.internal.resources.Workspace.run(Workspace.java:2317)
	at org.eclipse.buildship.core.internal.operation.DefaultToolingApiOperationManager.run(DefaultToolingApiOperationManager.java:39)
	at org.eclipse.buildship.core.internal.DefaultGradleBuild$SynchronizeOperation.run(DefaultGradleBuild.java:192)
	at org.eclipse.buildship.core.internal.DefaultGradleBuild.synchronize(DefaultGradleBuild.java:100)
	at org.eclipse.buildship.core.internal.DefaultGradleBuild.synchronize(DefaultGradleBuild.java:86)
	at org.eclipse.jdt.ls.core.internal.managers.GradleProjectImporter.startSynchronization(GradleProjectImporter.java:238)
	at org.eclipse.jdt.ls.core.internal.managers.GradleProjectImporter.importDir(GradleProjectImporter.java:127)
	at org.eclipse.jdt.ls.core.internal.managers.GradleProjectImporter.lambda$0(GradleProjectImporter.java:119)
	at java.base/java.util.ArrayList.forEach(ArrayList.java:1511)
	at java.base/java.util.Collections$UnmodifiableCollection.forEach(Collections.java:1087)
	at org.eclipse.jdt.ls.core.internal.managers.GradleProjectImporter.importToWorkspace(GradleProjectImporter.java:119)
	at org.eclipse.jdt.ls.core.internal.managers.ProjectsManager.importProjects(ProjectsManager.java:108)
	at org.eclipse.jdt.ls.core.internal.managers.ProjectsManager.initializeProjects(ProjectsManager.java:98)
	at org.eclipse.jdt.ls.core.internal.handlers.InitHandler$1.runInWorkspace(InitHandler.java:195)
	at org.eclipse.core.internal.resources.InternalWorkspaceJob.run(InternalWorkspaceJob.java:42)
	at org.eclipse.core.internal.jobs.Worker.run(Worker.java:63)

[Error - 6:15:59 PM] Aug 20, 2020, 6:15:59 PM Failed to configure project war-liberty-sample
Test source folder 'src/test/java' in project 'war-liberty-sample' must have an output folder that is not also used for main sources
Java Model Exception: Java Model Status [Test source folder 'src/test/java' in project 'war-liberty-sample' must have an output folder that is not also used for main sources]
	at org.eclipse.jdt.internal.core.JavaModelOperation.runOperation(JavaModelOperation.java:798)
	at org.eclipse.jdt.internal.core.JavaProject.setRawClasspath(JavaProject.java:3608)
	at org.eclipse.jdt.internal.core.JavaProject.setRawClasspath(JavaProject.java:3568)
	at org.eclipse.jdt.internal.core.JavaProject.setRawClasspath(JavaProject.java:3624)
	at org.eclipse.buildship.core.internal.workspace.SourceFolderUpdater.updateSourceFolders(SourceFolderUpdater.java:71)
	at org.eclipse.buildship.core.internal.workspace.SourceFolderUpdater.update(SourceFolderUpdater.java:169)
	at org.eclipse.buildship.core.internal.workspace.BaseConfigurator.synchronizeJavaProjectInTransaction(BaseConfigurator.java:116)
	at org.eclipse.buildship.core.internal.workspace.BaseConfigurator.access$000(BaseConfigurator.java:40)
	at org.eclipse.buildship.core.internal.workspace.BaseConfigurator$1.run(BaseConfigurator.java:105)
	at org.eclipse.jdt.internal.core.BatchOperation.executeOperation(BatchOperation.java:41)
	at org.eclipse.jdt.internal.core.JavaModelOperation.run(JavaModelOperation.java:736)
	at org.eclipse.core.internal.resources.Workspace.run(Workspace.java:2292)
	at org.eclipse.core.internal.resources.Workspace.run(Workspace.java:2317)
	at org.eclipse.jdt.core.JavaCore.run(JavaCore.java:5895)
	at org.eclipse.jdt.core.JavaCore.run(JavaCore.java:5852)
	at org.eclipse.buildship.core.internal.workspace.BaseConfigurator.synchronizeJavaProject(BaseConfigurator.java:101)
	at org.eclipse.buildship.core.internal.workspace.BaseConfigurator.configure(BaseConfigurator.java:91)
	at org.eclipse.buildship.core.internal.workspace.BaseConfigurator.configure(BaseConfigurator.java:66)
	at org.eclipse.buildship.core.internal.extension.InternalProjectConfigurator.configure(InternalProjectConfigurator.java:65)
	at org.eclipse.buildship.core.internal.workspace.ProjectConfigurators.configureConfigurators(ProjectConfigurators.java:70)
	at org.eclipse.buildship.core.internal.workspace.SynchronizeGradleBuildOperation.synchronizeOpenWorkspaceProject(SynchronizeGradleBuildOperation.java:163)
	at org.eclipse.buildship.core.internal.workspace.SynchronizeGradleBuildOperation.synchronizeWorkspaceProject(SynchronizeGradleBuildOperation.java:137)
	at org.eclipse.buildship.core.internal.workspace.SynchronizeGradleBuildOperation.synchronizeGradleProjectWithWorkspaceProject(SynchronizeGradleBuildOperation.java:127)
	at org.eclipse.buildship.core.internal.workspace.SynchronizeGradleBuildOperation.access$000(SynchronizeGradleBuildOperation.java:42)
	at org.eclipse.buildship.core.internal.workspace.SynchronizeGradleBuildOperation$1.run(SynchronizeGradleBuildOperation.java:85)
	at org.eclipse.core.internal.resources.Workspace.run(Workspace.java:2292)
	at org.eclipse.core.internal.resources.Workspace.run(Workspace.java:2312)
	at org.eclipse.buildship.core.internal.workspace.SynchronizeGradleBuildOperation.synchronizeProjectsWithWorkspace(SynchronizeGradleBuildOperation.java:82)
	at org.eclipse.buildship.core.internal.workspace.SynchronizeGradleBuildOperation.run(SynchronizeGradleBuildOperation.java:64)
	at org.eclipse.buildship.core.internal.DefaultGradleBuild$SynchronizeOperation.runInToolingApi(DefaultGradleBuild.java:230)
	at org.eclipse.buildship.core.internal.operation.DefaultToolingApiOperationManager$WorkspaceRunnableAdapter.run(DefaultToolingApiOperationManager.java:58)
	at org.eclipse.core.internal.resources.Workspace.run(Workspace.java:2292)
	at org.eclipse.core.internal.resources.Workspace.run(Workspace.java:2317)
	at org.eclipse.buildship.core.internal.operation.DefaultToolingApiOperationManager.run(DefaultToolingApiOperationManager.java:39)
	at org.eclipse.buildship.core.internal.DefaultGradleBuild$SynchronizeOperation.run(DefaultGradleBuild.java:192)
	at org.eclipse.buildship.core.internal.DefaultGradleBuild.synchronize(DefaultGradleBuild.java:100)
	at org.eclipse.buildship.core.internal.DefaultGradleBuild.synchronize(DefaultGradleBuild.java:86)
	at org.eclipse.jdt.ls.core.internal.managers.GradleProjectImporter.startSynchronization(GradleProjectImporter.java:238)
	at org.eclipse.jdt.ls.core.internal.managers.GradleProjectImporter.importDir(GradleProjectImporter.java:127)
	at org.eclipse.jdt.ls.core.internal.managers.GradleProjectImporter.lambda$0(GradleProjectImporter.java:119)
	at java.base/java.util.ArrayList.forEach(ArrayList.java:1511)
	at java.base/java.util.Collections$UnmodifiableCollection.forEach(Collections.java:1087)
	at org.eclipse.jdt.ls.core.internal.managers.GradleProjectImporter.importToWorkspace(GradleProjectImporter.java:119)
	at org.eclipse.jdt.ls.core.internal.managers.ProjectsManager.importProjects(ProjectsManager.java:108)
	at org.eclipse.jdt.ls.core.internal.managers.ProjectsManager.initializeProjects(ProjectsManager.java:98)
	at org.eclipse.jdt.ls.core.internal.handlers.InitHandler$1.runInWorkspace(InitHandler.java:195)
	at org.eclipse.core.internal.resources.InternalWorkspaceJob.run(InternalWorkspaceJob.java:42)
	at org.eclipse.core.internal.jobs.Worker.run(Worker.java:63)

[Error - 6:16:00 PM] Aug 20, 2020, 6:16:00 PM An internal error occurred during: "Initialize workspace".
Path must include project and resource name: /war-liberty-sample
java.lang.IllegalArgumentException: Path must include project and resource name: /war-liberty-sample
	at org.eclipse.core.runtime.Assert.isLegal(Assert.java:66)
	at org.eclipse.core.internal.resources.Workspace.newResource(Workspace.java:2122)
	at org.eclipse.core.internal.resources.Container.getFolder(Container.java:205)
	at org.eclipse.jdt.ls.core.internal.managers.StandardProjectsManager.registerWatchers(StandardProjectsManager.java:335)
	at org.eclipse.jdt.ls.core.internal.handlers.JDTLanguageServer$2.run(JDTLanguageServer.java:300)
	at org.eclipse.core.internal.jobs.Worker.run(Worker.java:63)

[Error - 6:16:00 PM] Aug 20, 2020, 6:16:00 PM An internal error occurred during: "Register Watchers".
Path must include project and resource name: /war-liberty-sample
java.lang.IllegalArgumentException: Path must include project and resource name: /war-liberty-sample
	at org.eclipse.core.runtime.Assert.isLegal(Assert.java:66)
	at org.eclipse.core.internal.resources.Workspace.newResource(Workspace.java:2122)
	at org.eclipse.core.internal.resources.Container.getFolder(Container.java:205)
	at org.eclipse.jdt.ls.core.internal.managers.StandardProjectsManager.registerWatchers(StandardProjectsManager.java:335)
	at org.eclipse.jdt.ls.core.internal.managers.StandardProjectsManager$1.run(StandardProjectsManager.java:99)
	at org.eclipse.core.internal.jobs.Worker.run(Worker.java:63)

Current Result

Attaching minimum sample. In build.gradle -> plugins can switch between the id 'java-library' and id 'war' plugins. When the war plugin is active, project breaks in vscode (errors on every class, no autocomplete) if there is src/test.

Try remove the src/test folder and it returns to normal.

Expected Result

Additional Informations

Tried cleaning all conceivable caches - gradle and vscode included. Ran it in a fresh VM as well with the same gradle/java combo. Affects local vscode development as well as the remote option (via ssh).

tar -xzvf
war-liberty-sample.tar.gz

使用 war 和 Liberty 插件以及 src/test/java 的 Gradle webapp 重现该故障。从报告的 stack trace 中的 SourceFolderUpdater.updateSourceFolders 条目开始，检查 Gradle 项目的导入路径。当 VS Code 在不出现输出文件夹错误的情况下配置 main 和 test 源，并且命令行构建和测试仍能正常工作时，即视为完成。