pyg-team/pytorch_geometric

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Graph Neural Network Library for PyTorch

Stars: 24.1k
Forks: 4.1k
Open beginner issues: 4
Indexed issues: 975
Avg merge: 1d 15h
Merged PRs (30d): 2

Dominant language: Python
License: MIT
Last GitHub push: Sep 1, 2026
Latest indexed: Sep 19, 2026
Contributing guide: Contributing guide
Code of conduct: No code of conduct
Beginner labels: help wanted good first issue

Beginner friendly Everything

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975 open issues indexed

unbatch_edge_index drops trailing edgeless graphs when batch_size is inferred Open

Difficulty 2/5 1-3 hours Newbie friendliness 88/100

pyg-team/pytorch_geometric#10815 · Opened Sep 16, 2026
`Batch.from_data_list` only store node/edge types of first element for `HeteroData` Open

documentation

Difficulty 2/5 1-3 hours Newbie friendliness 72/100

pyg-team/pytorch_geometric#10801 · Opened Sep 7, 2026
APPNP applies edge dropout cumulatively across propagation steps Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 65/100

pyg-team/pytorch_geometric#10783 · Opened Aug 28, 2026
Avoid importing the `llm` subtree (and pandas) on `import torch_geometric` Open

Difficulty 2/5 1-3 hours Newbie friendliness 78/100

pyg-team/pytorch_geometric#10772 · Opened Aug 16, 2026
HeteroData.subgraph() crashes for edge attributes with non-zero concatenation dimensions Open

Difficulty 2/5 1-3 hours Newbie friendliness 74/100

pyg-team/pytorch_geometric#10768 · Opened Aug 9, 2026
ssl._create_unverified_context() in dataset download enables supply-chain MITM Open

bug

Difficulty 2/5 1-3 hours Newbie friendliness 68/100

pyg-team/pytorch_geometric#10732 · Opened Jun 16, 2026
Feature Request: v2 version of DenseGATConv Open

feature

Difficulty 5/5 Over a week Newbie friendliness 35/100

pyg-team/pytorch_geometric#10722 · Opened Jun 9, 2026
Notebook `5. Point Cloud Classification` still uses `torch-cluster` instead of `pyg-lib` Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 55/100

pyg-team/pytorch_geometric#10720 · 4 comments · Opened Jun 8, 2026
Deprecate `torch-{scatter,sparse,spline-conv,cluster}` releases on PyPI Open

pyg-team/pytorch_geometric#10716 · 1 assignee · Opened Jun 5, 2026
RandomLinkSplit can create overlapping negative val and test edges for undirected graphs Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 58/100

pyg-team/pytorch_geometric#10706 · 2 comments · Opened May 31, 2026
Implementing Stable ChebConv - Enhancing ChebConv in increasing stability and long range capability Open

feature

Difficulty 5/5 Over a week Newbie friendliness 35/100

pyg-team/pytorch_geometric#10702 · Opened May 21, 2026
DeprecationWarning: `torch.jit.script` is deprecated. Please switch to `torch.compile` or `torch.export`. Open

0 - Priority P0 bug

Difficulty 2/5 1-3 hours Newbie friendliness 62/100

pyg-team/pytorch_geometric#10697 · 1 reaction · Opened May 17, 2026
Implement PaiNN (Polarizable Atomistic Interaction Neural Network) Open

feature

Difficulty 5/5 Over a week Newbie friendliness 35/100

pyg-team/pytorch_geometric#10687 · 1 comment · 1 reaction · Opened May 1, 2026
torch_sparse and torch_scatter are not correctly installed when following the torch_geomtric installation instructions Open

installation

Difficulty 3/5 1-2 days Newbie friendliness 48/100

pyg-team/pytorch_geometric#10686 · 1 comment · Opened Apr 30, 2026
Migrate PyG CUDA/C++ extensions into `pyg-lib` Open

pyg-team/pytorch_geometric#10684 · 1 assignee · Opened Apr 30, 2026
Is similarity actually a structural mapping problem? Open

feature

Difficulty 5/5 Over a week Newbie friendliness 15/100

pyg-team/pytorch_geometric#10683 · Opened Apr 30, 2026
Facebook dataset HTTP Error 404: Not Found Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 52/100

pyg-team/pytorch_geometric#10672 · 1 reaction · Opened Apr 23, 2026
[SECURITY] Users have no way to enforce `weights_only=True` Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 38/100

pyg-team/pytorch_geometric#10665 · Opened Apr 11, 2026
HGTConv doesn't support setting of aggr Open

documentation

Difficulty 4/5 3-5 days Newbie friendliness 45/100

pyg-team/pytorch_geometric#10664 · Opened Apr 7, 2026
Support for LightningModules in to_hetero() and to_hetero_with_bases() Open

feature

Difficulty 4/5 3-5 days Newbie friendliness 50/100

pyg-team/pytorch_geometric#10653 · Opened Mar 30, 2026
Missing wheels of `torch-{scatter,sparse,cluster}` for combination of Windows CUDA 13.0 Open

feature installation

Difficulty 4/5 3-5 days Newbie friendliness 42/100

pyg-team/pytorch_geometric#10649 · 1 reaction · Opened Mar 26, 2026
RandomNodeSplit fails on HeteroData Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 35/100

pyg-team/pytorch_geometric#10632 · 1 comment · Opened Mar 8, 2026
post_step clamping process doesn't preserve training labels in LabelPropagation Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 35/100

pyg-team/pytorch_geometric#10627 · 1 comment · Opened Mar 3, 2026
`OnDiskDataset.get()` not working as expected after using `index_select()` Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 52/100

pyg-team/pytorch_geometric#10621 · 3 comments · Opened Feb 25, 2026
HeteroData silently accepts numpy arrays. Then fails during training with cryptic message Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 52/100

pyg-team/pytorch_geometric#10597 · 7 comments · Opened Feb 8, 2026
Temporal Sampling for `NeighborLoader` Within a Time Window Open

feature

Difficulty 5/5 Over a week Newbie friendliness 35/100

pyg-team/pytorch_geometric#10593 · Opened Feb 4, 2026
Wrong GNNBenchmarkDataset MNIST Data Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 35/100

pyg-team/pytorch_geometric#10592 · 1 reaction · Opened Feb 3, 2026
There is a bug when you put 0.0 for val_ratio in RadnomLinkSplit Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 45/100

pyg-team/pytorch_geometric#10590 · Opened Jan 30, 2026
Add Graph Feedforward Network as a Graph Unpooling Layer Open

feature

Difficulty 5/5 Over a week Newbie friendliness 25/100

pyg-team/pytorch_geometric#10587 · Opened Jan 21, 2026
Stochastic Random Graph Generation via Distance-Weighted Gumbel Top-k Sampling Open

feature

Difficulty 5/5 Over a week Newbie friendliness 35/100

pyg-team/pytorch_geometric#10585 · Opened Jan 20, 2026
[Doc] Update `ResGatedGraphConv` documentation to include edge feature handling Open

documentation

Difficulty 2/5 1-3 hours Newbie friendliness 48/100

pyg-team/pytorch_geometric#10578 · Opened Jan 11, 2026
How to add python types? Open

bug

Difficulty 5/5 Over a week Newbie friendliness 25/100

pyg-team/pytorch_geometric#10576 · 1 comment · 1 reaction · Opened Jan 9, 2026
Clarify in radius and radius_graph that the implementation is O(N^2) on GPU Open

documentation

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

pyg-team/pytorch_geometric#10567 · Opened Dec 23, 2025
Induced graph sampling cannot be performed when a time attribute is specified, even if pyg-lib has been installed. Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 45/100

pyg-team/pytorch_geometric#10566 · 1 comment · Opened Dec 22, 2025
The edge_index changes after propagation, the indexes becoming extremely large numbers. Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 25/100

pyg-team/pytorch_geometric#10563 · Opened Dec 18, 2025
Return latent edge features (when learned) Open

feature

Difficulty 5/5 Over a week Newbie friendliness 25/100

pyg-team/pytorch_geometric#10539 · Opened Nov 26, 2025
to_dense_adj fails when the nodes are not ordered by batch Open

bug

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

pyg-team/pytorch_geometric#10534 · Opened Nov 24, 2025
doc: MulAggregation type Open

Difficulty 1/5 Under an hour Newbie friendliness 68/100

pyg-team/pytorch_geometric#10529 · Opened Nov 12, 2025
下载FacebookPagePage数据集 Open

refactor

Difficulty 3/5 1-2 days Newbie friendliness 48/100

pyg-team/pytorch_geometric#10525 · 1 comment · Opened Nov 7, 2025
LinkPredNDCG does not cast discount to device Open

bug

Difficulty 2/5 1-3 hours Newbie friendliness 48/100

pyg-team/pytorch_geometric#10518 · 1 comment · Opened Oct 30, 2025
qm9_nn_conv.py yields very large and inconsistent results Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 43/100

pyg-team/pytorch_geometric#10517 · 1 comment · Opened Oct 30, 2025
Twitch dataset appears to be offline and raises HTTP Error 404 Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 35/100

pyg-team/pytorch_geometric#10510 · 2 comments · Opened Oct 27, 2025
tensorboard writer.add_graph fails with HeteroConv due to jit.trace not supporting tuple dictionary keys Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 38/100

pyg-team/pytorch_geometric#10421 · Opened Aug 26, 2025
Missing static support for CuGraphRGCNConv Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 38/100

pyg-team/pytorch_geometric#10402 · 3 comments · Opened Aug 9, 2025
Initialising pyg.Sequential makes the program run twice Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 45/100

pyg-team/pytorch_geometric#10393 · 1 reaction · Opened Aug 4, 2025
Custom callbacks in graphgym.train Open

feature

Difficulty 2/5 1-3 hours Newbie friendliness 50/100

pyg-team/pytorch_geometric#10386 · Opened Jul 26, 2025
Importing torch_geometric pins cuda device in unrelated package Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 25/100

pyg-team/pytorch_geometric#10376 · Opened Jul 22, 2025
data.collate() only works for sparse tensors of dimension 2 Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 48/100

pyg-team/pytorch_geometric#10374 · Opened Jul 21, 2025
Data object __repr__ shows incorrect 'y' value for TUDataset (e.g., ENZYMES) Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 45/100

pyg-team/pytorch_geometric#10372 · 1 comment · Opened Jul 21, 2025
Batch._slice_dict is shared when `copy.deepcopy` and hard to locate. Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 35/100

pyg-team/pytorch_geometric#10364 · Opened Jul 14, 2025

pyg-team/pytorch_geometric

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