populationgenomics / populationgenomics/team-docs
Linter for pinned versions
Nobody has claimed this yet.
- Dominant language
- Python
- Stars
- 3
- Forks
- 1
- PR merge metrics
- No merged PRs in 30d
Description
To address (3) in https://github.com/populationgenomics/team-docs/blob/main/reproducible_analyses.md ("Pin all dependencies of your code to a specific version"), it would be great to have a linter that works with our standard Conda / R environment package specifications. There's likely already something that we could reuse.
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reading reproducible_analyses.md, especially item (3), and identify how the team's standard Conda and R environment package specifications are represented. Research existing tools that can lint those specifications and determine what integration would be needed. Done means a concrete reusable linter and an agreed path for applying it to the team's environment files.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- r
- Domain
- tooling
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 30/100