populationgenomics / populationgenomics/analysis-runner
Create TOML config reader utility for R
Open
Nobody has claimed this yet.
- Dominant language
- Python
- Stars
- 2
- Forks
- 5
- Avg merge
- 4d 22h
- Merged PRs (30d)
- 8
Description
The R example is still accessing environment variables instead of reading the TOML config blob.
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with examples/r/script.R at lines 23-24 and review the referenced cpg-utils pull request 35 for how the TOML config blob is read. Replace the example's environment-variable access with the TOML configuration reader, and verify that the R example uses the config blob as intended.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- r
- Domain
- tooling
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 45/100