plotly / plotly/plotly.py

Pandas import error

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bug P3
Dominant language
Python
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Description

A Dash user is seeing an error from pandas without ever directly importing pandas, just dash, plotly, and numpy. https://community.plotly.com/t/callback-error-when-plotting-multiple-graph-objects/38756

The error occurs inside plotly when the Dash app tries to render one of the plots in a callback:

Traceback (most recent call last):
  File "/Users/alex/plotly/fiddle/f.py", line 74, in update_dist_plot
    "data": [go.Bar(x=bins, y=counts)],
  File "/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/plotly/graph_objs/__init__.py", line 93149, in __init__
    self["x"] = x if x is not None else _v
  File "/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/plotly/basedatatypes.py", line 3490, in __setitem__
    self._set_prop(prop, value)
  File "/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/plotly/basedatatypes.py", line 3772, in _set_prop
    val = validator.validate_coerce(val)
  File "/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/_plotly_utils/basevalidators.py", line 385, in validate_coerce
    v = copy_to_readonly_numpy_array(v)
  File "/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/_plotly_utils/basevalidators.py", line 93, in copy_to_readonly_numpy_array
    if pd and isinstance(v, (pd.Series, pd.Index)):
AttributeError: module 'pandas' has no attribute 'Series'

That's the error I see - the OP's error message is a little more extensive, which is a little funny because we both report pandas v1.0.3

AttributeError: partially initialized module ‘pandas’ has no attribute ‘Series’ (most likely due to a circular import)

I can reproduce locally with this app:

import dash_core_components as dcc
import dash_html_components as html
from dash import Dash
from dash.dependencies import Input, Output
import plotly.graph_objs as go
import numpy as np

app = Dash(__name__)

app.layout = html.Div(
    [
        html.Div(
            [
                html.Br(),
                html.Label("Plotting Options"),
                dcc.RadioItems(
                    id="trunk-angle-radio",
                    options=[
                        {"label": "Sagittal", "value": "Sagittal"},
                        {"label": "Lateral", "value": "Lateral"},
                        {"label": "Twist", "value": "Twist"},
                    ],
                    value="Sagittal",
                ),
            ]
        ),
        html.Div(
            [
                html.Div(
                    [dcc.Graph(id="trunk-angle-plot")],
                    style={"width": "48%", "display": "inline-block"},
                ),
                html.Div(
                    [dcc.Graph(id="trunk-angle-dist")],
                    style={"width": "48%", "display": "inline-block", "float": "right"},
                ),
            ]
        ),
        html.Div(
            [
                html.Label("Data Statistics"),
                html.Div(id="data-stats-div", style={"padding": 10}),
            ]
        ),
    ]
)


@app.callback(
    Output("trunk-angle-plot", "figure"), [Input("trunk-angle-radio", "value")]
)
def update_angle_plot(radio_option):
    (x, y) = get_trunk_angles(radio_option)
    fig = {
        "data": [go.Scatter(x=x, y=y, mode="lines+markers")],
        "layout": go.Layout(
            title="Trunk Angle Time Series Plot",
            xaxis={"title": "Time (sec)"},
            yaxis={"title": "Degrees"},
        ),
    }
    return fig


@app.callback(
    Output("trunk-angle-dist", "figure"), [Input("trunk-angle-radio", "value")]
)
def update_dist_plot(radio_option):
    (x, y) = get_trunk_angles(radio_option)
    counts, bins = np.histogram(y, bins=range(-90, 91, 30))
    bins = bins + (bins[1] - bins[0]) / 2
    # print(counts, bins)
    fig = {
        "data": [go.Bar(x=bins, y=counts)],
        "layout": go.Layout(
            title="Trunk Angle Distributions",
            xaxis={
                "title": "Bin midpoint (degrees)",
                "tickmode": "array",
                "tickvals": bins,
                "ticktext": [str(int(bin)) for bin in bins],
            },
            yaxis={"title": "Percentage of time"},
        ),
    }
    return fig


@app.callback(
    Output("data-stats-div", "children"), [Input("trunk-angle-radio", "value")]
)
def update_stats(radio_option):
    (x, y) = get_trunk_angles(radio_option)
    stats_div = [
        html.Div("Minimum: {}".format(np.min(y)), id="trunk-angle-dist-min"),
        html.Div("Maximum: {}".format(np.max(y)), id="trunk-angle-dist-max"),
        html.Div("Mean: {:.2f}".format(np.mean(y)), id="trunk-angle-dist-mean"),
        html.Div(
            "Standard Deviation: {:.2f}".format(np.std(y)), id="trunk-angle-dist-std"
        ),
        html.Div(
            "Range: {}".format(np.max(y) - np.min(y)), id="trunk-angle-dist-range"
        ),
    ]
    return stats_div


def get_trunk_angles(radio_option):

    dummy_x = np.linspace(0, 50, 101)

    if radio_option == "Sagittal":
        dummy_y = np.random.randint(-90, 90, 101)
    elif radio_option == "Lateral":
        dummy_y = np.random.randint(-90, 90, 101)
    elif radio_option == "Twist":
        dummy_y = np.random.randint(-90, 90, 101)

    return (dummy_x, dummy_y)


if __name__ == "__main__":
    app.run_server(debug=True)

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Reproduce the supplied Dash app and start with the traceback locations in plotly/basedatatypes.py and _plotly_utils/basevalidators.py, especially update_dist_plot and copy_to_readonly_numpy_array. Trace why pandas lacks Series during go.Bar construction, then verify the callback renders without the reported AttributeError.

Written by the indexing model from the issue text.

Assessment

Tech stack
numpy, pandas, python
Domain
data-visualization
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

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