Connecting Snakemake and PEPhub
Open
Nobody has claimed this yet.
- Dominant language
- TypeScript
- Stars
- 22
- Forks
- 2
- PR merge metrics
- No merged PRs in 30d
Description
What would it take to make it possible to run a Snakemake pipeline from a pephub registry path?
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
The issue names no files, tests, or entry points. Start by tracing how PEPhub registry paths are handled and where Snakemake pipelines would be invoked; the issue does not define acceptance criteria, so the integration scope and completion criteria must be established first.
Written by the indexing model from the issue text.
Assessment
- Domain
- backend-api-design, bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100