pepkit / pepkit/pephub

PEPhub could accommodate pipeline result attributes

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enhancement
Dominant language
TypeScript
Stars
22
Forks
2
PR merge metrics
No merged PRs in 30d

Description

This is a long-term feature request I wanted to record.

In its early state, PEPhub is viewed as a metadata server. In the long term, users could also report pipeline results to the sample table, as we often do when running a pipeline to create an "output" table.

In other words, right now PEPhub is focused on input sample tables, but it could be extended to work as a system also for output tables.

Contributor guide

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First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Begin by reviewing PEPhub's existing web API and database support for input sample tables, then identify how pipeline result attributes and output tables would fit. Done would mean a defined and implemented path for reporting pipeline results alongside the current input metadata.

Written by the indexing model from the issue text.

Assessment

Tech stack
typescript
Domain
api, databases
Issue type
Feature
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
20/100

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