OME-XML equivalent data
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- Python
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Description
Hi all, first, thanks for starting this project - we are considering NGFF / Zarr 3.0 for large 3D multichannel datasets of light-sheet microscopy brain data.
I'm wondering if there is any plan to capture OME-XML data in the Zarr attribute hierarchy, in particular the microscopy data such as Instrument. I'd be happy to participate in the discussion and formulation of this extension.
--Lee
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First steps
- Read the whole issue, then the project's contributing guide.
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Research direction
The issue names no implementation files or tests. Start by reviewing the NGFF/Zarr attribute hierarchy and the OME-XML Instrument schema linked in the discussion, then determine how microscopy metadata could be represented. Done would require an agreed extension design and its specification.
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Assessment
- Domain
- data
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100