nmfs-ost/ss3-source-code

Auf GitHub ansehen

The source code for Stock Synthesis (SS3).

Sterne: 46
Forks: 19
Offene Anfänger-Issues: 0
Indexierte Issues: 44

Vorherrschende Sprache: C++
Lizenz: CC0-1.0
Letzter GitHub-Push: 28.7.2026
Zuletzt indexiert: 19.9.2026
Beitragsleitfaden: Beitragsleitfaden
Verhaltenskodex: Verhaltenskodex
Anfänger-Labels: Keine Anfänger-Labels indexiert
PR-Merge-Kennzahlen: Keine gemergten PRs in 30 T.

Einsteigerfreundlich Alles

Offen Alle

Bisher 44 offene Issues indexiert

need warning and improved logic for generalized sizecomp Offen

composition in progress

nmfs-ost/ss3-source-code#751 · 1 Kommentar · 1 zugewiesene Person · Erstellt am 02.2.2026
[Feature]: Add standard errors for area-specific quantities Offen

area & movement

nmfs-ost/ss3-source-code#731 · 3 Kommentare · 1 zugewiesene Person · Erstellt am 16.9.2025
[Feature]: Create a basic report list that could serve as better starting configuration for customization Offen

misc. output

nmfs-ost/ss3-source-code#723 · 1 zugewiesene Person · Erstellt am 09.9.2025
[Feature]: restrict biology output using the use_morph(g) flag Offen

biology misc. output ongoing

nmfs-ost/ss3-source-code#702 · 1 zugewiesene Person · Erstellt am 18.8.2025
[Feature]: mean vs median recruitment when using SCAA option Offen

recruitment

nmfs-ost/ss3-source-code#696 · 1 zugewiesene Person · Erstellt am 31.7.2025
[Feature]: dedicated option for timesteps as continuous seasons Offen

misc. input recruitment wishlist

nmfs-ost/ss3-source-code#660 · 1 zugewiesene Person · Erstellt am 17.3.2025
[Feature]: Implement calculation of effective degrees of freedom Offen

in progress new request statistics wishlist

nmfs-ost/ss3-source-code#651 · 13 Kommentare · 3 zugewiesene Personen · Erstellt am 13.1.2025
[Refactor]: bio_yr and bio_t_base are little used and should be replaceable Offen

misc. internal calc quick

nmfs-ost/ss3-source-code#626 · 1 zugewiesene Person · Erstellt am 04.10.2024
[Feature]: Cohort growth deviation added to Linf (or L2) Offen

EPIC:GROWTH_M25 growth wishlist

nmfs-ost/ss3-source-code#599 · 1 Kommentar · 1 zugewiesene Person · Erstellt am 14.5.2024
[Bug]: "inf" value in bootstrap of mean size-at-age data for ages with sample size 0 Offen

bug misc. output quick

nmfs-ost/ss3-source-code#598 · 1 zugewiesene Person · Erstellt am 02.5.2024
[Feature]: Mean recruitment adjustment Offen

benchmark - MSY in progress recruitment

nmfs-ost/ss3-source-code#594 · 17 Kommentare · 2 zugewiesene Personen · Erstellt am 26.4.2024
[Feature]: Revise recdev_bias adjustment to be a customizable list of line segments Offen

recruitment

nmfs-ost/ss3-source-code#588 · 1 zugewiesene Person · Erstellt am 17.4.2024
[Refactor]: create function for t=f(y,s) Offen

misc. internal calc quick

nmfs-ost/ss3-source-code#578 · 1 zugewiesene Person · Erstellt am 11.3.2024
[Feature]: add discard body weights to wtatage.ss Offen

discard & retention duplicate wishlist

nmfs-ost/ss3-source-code#575 · 1 Kommentar · 1 zugewiesene Person · Erstellt am 27.2.2024
[Refactor]: DM for age discard Offen

discard & retention

nmfs-ost/ss3-source-code#573 · 1 zugewiesene Person · Erstellt am 22.2.2024
[Bug]: crash when do_recdev = 0 is combined with SRR option 7 (but work-around is available) Offen

recruitment

nmfs-ost/ss3-source-code#560 · 1 zugewiesene Person · Erstellt am 01.2.2024
[Feature]: Apply the depletion survey (option 34) with an initial year that is not unfished Offen

nmfs-ost/ss3-source-code#529 · 5 Kommentare · 1 zugewiesene Person · Erstellt am 14.11.2023
[Feature]: update dynamic Bzero to work with recdev options 3&4 Offen

misc. internal calc recruitment

nmfs-ost/ss3-source-code#507 · 1 zugewiesene Person · Erstellt am 26.9.2023
[Feature]: add option to input matrix of M by year & age Offen

natural mortality wishlist

nmfs-ost/ss3-source-code#503 · 1 zugewiesene Person · Erstellt am 19.9.2023
[Feature]: Add generalized gamma index likelihood Offen

statistics survey_&_Q wishlist

nmfs-ost/ss3-source-code#497 · 16 Kommentare · 3 zugewiesene Personen · Erstellt am 18.8.2023
[Feature]: Add capability for seasonal offset in a CPUE catchability Offen

duplicate new request survey_&_Q time-vary parm wishlist

nmfs-ost/ss3-source-code#481 · 1 zugewiesene Person · Erstellt am 21.7.2023
[Feature]: Add age range option to 2DAR selectivity Offen

new request selectivity

nmfs-ost/ss3-source-code#461 · 3 zugewiesene Personen · Erstellt am 02.6.2023
[Feature]: Option to omit age_error definitions Offen

composition new request quick

nmfs-ost/ss3-source-code#459 · 2 zugewiesene Personen · Erstellt am 01.6.2023
[Feature]: add suggestion to warning files for F_method 2 or 3 to nudge users towards F_method 4 Offen

fishing mortality new request quick warnings

nmfs-ost/ss3-source-code#445 · 2 zugewiesene Personen · Erstellt am 18.5.2023
[Feature]: Include MSY options selected in Report.sso Offen

misc. output new request question

nmfs-ost/ss3-source-code#294 · 2 Kommentare · 2 zugewiesene Personen · Erstellt am 19.4.2022
[Feature]: Allow survey index to be either total or retained catch Offen

new request wishlist

nmfs-ost/ss3-source-code#275 · 1 Kommentar · 1 zugewiesene Person · Erstellt am 16.3.2022
[Feature]: Multivariate-Tweedie for age/length compositional likelihood Offen

composition Epic: Data weighting improvement FIMS in progress statistics wishlist

nmfs-ost/ss3-source-code#266 · 34 Kommentare · 1 zugewiesene Person · Erstellt am 07.3.2022
[Feature]: Report forecast catch with and without 40:10 adjustment (or equivalent) Offen

forecast misc. output new request wishlist

nmfs-ost/ss3-source-code#193 · 3 Kommentare · 1 zugewiesene Person · Erstellt am 12.8.2021
[Feature]: Output body weight-at-age of retained and discarded fish when retention function is used Offen

code review misc. output wishlist

nmfs-ost/ss3-source-code#81 · 1 Kommentar · 1 zugewiesene Person · Erstellt am 05.11.2020
[Feature]: Develop design matrix approach to share movement parameters Offen

area & movement Epic: Improve movement wishlist

nmfs-ost/ss3-source-code#60 · 3 Kommentare · 1 zugewiesene Person · Erstellt am 05.11.2020
[Feature]: Equilibrium growth for equilibrium calculations Offen

benchmark - MSY Epic: Equilibrium calcs hard wishlist

nmfs-ost/ss3-source-code#58 · 2 Kommentare · 1 zugewiesene Person · Erstellt am 05.11.2020
[Feature]: Seasonal effects for catchability and selectivity Offen

duplicate survey_&_Q time-vary parm wishlist

nmfs-ost/ss3-source-code#53 · 1 zugewiesene Person · Erstellt am 05.11.2020
[Feature]: Condition factor Offen

biology wishlist

nmfs-ost/ss3-source-code#50 · 1 zugewiesene Person · Erstellt am 05.11.2020
[Feature]: Movement is fxn of mean length-at-age Offen

area & movement Epic: Improve movement wishlist

nmfs-ost/ss3-source-code#49 · 1 Kommentar · 1 zugewiesene Person · Erstellt am 05.11.2020
[Feature]: Virtual availability Offen

area & movement hard wishlist

nmfs-ost/ss3-source-code#39 · 1 Kommentar · 1 zugewiesene Person · Erstellt am 05.11.2020
Implementing new recruitment dev vector approach Offen

essay topic recruitment

nmfs-ost/ss3-source-code#37 · 13 Kommentare · 1 zugewiesene Person · Erstellt am 05.11.2020
[Refactor]: Dynamic spawner-recruitment logic in benchmarks and projections Offen

Epic: Equilibrium calcs on hold recruitment wishlist

nmfs-ost/ss3-source-code#36 · 6 Kommentare · 1 zugewiesene Person · Erstellt am 05.11.2020
Document and sim test recruitment dev_vector options Offen

essay topic needs testing recruitment

nmfs-ost/ss3-source-code#29 · 6 Kommentare · 1 zugewiesene Person · Erstellt am 05.11.2020
[Bug]: Richards growth coefficient range Offen

bug EPIC:GROWTH_M25 growth question

nmfs-ost/ss3-source-code#23 · 2 Kommentare · 1 zugewiesene Person · Erstellt am 05.11.2020
review implementation of parameter random effects Offen

Epic: Improve parameters essay topic needs testing time-vary parm

nmfs-ost/ss3-source-code#20 · 16 Kommentare · 1 zugewiesene Person · Erstellt am 05.11.2020
[Feature]: Input prior on derived selectivity Offen

Epic: Improve parameters selectivity statistics wishlist

nmfs-ost/ss3-source-code#13 · 3 Kommentare · 1 zugewiesene Person · Erstellt am 05.11.2020
[Feature]: Add other options to _CV_Growth_Pattern for log(SD) Offen

EPIC:GROWTH_M25 growth wishlist

nmfs-ost/ss3-source-code#9 · 1 zugewiesene Person · Erstellt am 05.11.2020
[Feature]: Report more info on deviations to PARAMETERS section of Report.sso Offen

Epic: Improve parameters misc. output wishlist

nmfs-ost/ss3-source-code#8 · 1 Kommentar · 1 zugewiesene Person · Erstellt am 05.11.2020
[Feature]: Year-specific MSY Offen

benchmark - MSY Epic: Improve bmarks/fcast hard wishlist

nmfs-ost/ss3-source-code#3 · 1 zugewiesene Person · Erstellt am 05.11.2020

nmfs-ost/ss3-source-code

Neue Issues direkt in Ihr Postfach