nf-core / nf-core/website

Renovate Dashboard 🤖

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Dominant language
MDX
Stars
98
Forks
298
Avg merge
14h 38m
Merged PRs (30d)
38

Description

This issue lists Renovate updates and detected dependencies. Read the Dependency Dashboard docs to learn more.
View this repository on the Mend.io Web Portal.

Abandoned Dependencies

The following dependencies have not received updates for an extended period and may be unmaintained.

[!NOTE]
Packages are marked as abandoned when they exceed the abandonmentThreshold since their last release. Unlike deprecated packages with official notices, abandonment is detected by release inactivity.

View abandoned dependencies (3)
Datasource Package Last Updated
github-actions jakepartusch/wait-for-netlify-action 2022-12-29
pre-commit pre-commit/mirrors-prettier 2023-12-21

Awaiting Schedule

The following updates are awaiting their schedule. To get an update now, click on a checkbox below.

  • Update dependency prettier to v3.9.7
  • Update dependency prettier-plugin-astro to v1
  • 🔐 Create all awaiting schedule PRs at once 🔐

Open

The following updates have all been created. To force a retry/rebase of any, click on a checkbox below.

Detected Dependencies

dockerfile (1)
.devcontainer/Dockerfile (1)
  • mcr.microsoft.com/devcontainers/javascript-node 4-20-bookworm@sha256:fbe82d01962ac07e80fb0ebc10c8edd09a4efeb8ecea765f4e13922cb5e862f6
github-actions (12)
.github/workflows/add-netlify-link.yml (1)
  • actions/github-script v9@3a2844b7e9c422d3c10d287c895573f7108da1b3
.github/workflows/add-tools-api-docs.yml (7)
  • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
  • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
  • actions/setup-node v7@820762786026740c76f36085b0efc47a31fe5020
  • astral-sh/setup-uv v10.0.1@20cfd1bf945f4377ade1205e4dbc17946fc9a30d → [Updates: v10.1.0]
  • j178/prek-action v3.0.0@4e14d07f9231acabce116ccfca13b13dd9755ece
  • peter-evans/create-pull-request v8@5f6978faf089d4d20b00c7766989d076bb2fc7f1
  • node 24
.github/workflows/blueskyfeedbot.yml (3)
  • actions/github-script v9@3a2844b7e9c422d3c10d287c895573f7108da1b3
  • actions/cache v6@55cc8345863c7cc4c66a329aec7e433d2d1c52a9
  • joschi/blueskyfeedbot v1@ded1962e3afb0d7283f49a037bf4d4fd9d7b86ad
.github/workflows/broken-link-checker.yml (2)
  • jakepartusch/wait-for-netlify-action v1.4@f1e137043864b9ab9034ae3a5adc1c108e3f1a48
  • JustinBeckwith/linkinator-action v2@12f7a61a56e5e75d659f0dfd6357e2d852ede281
.github/workflows/build-json-files.yml (3)
  • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
  • actions/setup-node v7@820762786026740c76f36085b0efc47a31fe5020
  • node 24
.github/workflows/delete-netlify-previews.yml (2)
  • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
  • astral-sh/setup-uv v10.0.1@20cfd1bf945f4377ade1205e4dbc17946fc9a30d → [Updates: v10.1.0]
.github/workflows/devcontainer-prebuild.yml (3)
  • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
  • docker/login-action v4@dbcb813823bdd20940b903addbd779551569679f
  • devcontainers/ci v0.3@513af61f4de4f75d37e4438f184ba4358f0fc1ca
.github/workflows/fix-linting.yml (10)
  • peter-evans/create-or-update-comment v5@e8674b075228eee787fea43ef493e45ece1004c9
  • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
  • actions/setup-node v7@820762786026740c76f36085b0efc47a31fe5020
  • j178/prek-action v3.0.0@4e14d07f9231acabce116ccfca13b13dd9755ece
  • actions/upload-artifact v7@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a
  • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
  • actions/download-artifact v8.0.1@3e5f45b2cfb9172054b4087a40e8e0b5a5461e7c
  • peter-evans/create-or-update-comment v5@e8674b075228eee787fea43ef493e45ece1004c9
  • peter-evans/create-or-update-comment v5@e8674b075228eee787fea43ef493e45ece1004c9
  • node 24
.github/workflows/linting.yml (8)
  • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
  • actions/setup-node v7@820762786026740c76f36085b0efc47a31fe5020
  • j178/prek-action v3.0.0@4e14d07f9231acabce116ccfca13b13dd9755ece
  • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
  • actions/setup-node v7@820762786026740c76f36085b0efc47a31fe5020
  • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
  • node 24
  • node 24
.github/workflows/playwright.yml (5)
  • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
  • actions/setup-node v7@820762786026740c76f36085b0efc47a31fe5020
  • jakepartusch/wait-for-netlify-action v1.4@f1e137043864b9ab9034ae3a5adc1c108e3f1a48
  • actions/upload-artifact v7@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a
  • node 24
.github/workflows/remove-canceled-netlify-builds.yml (1)
  • actions/github-script v9@3a2844b7e9c422d3c10d287c895573f7108da1b3
.github/workflows/rich-codex.yml (8)
  • actions/checkout v7@3d3c42e5aac5ba805825da76410c181273ba90b1
  • actions/setup-node v7@820762786026740c76f36085b0efc47a31fe5020
  • actions/setup-python v7@5fda3b95a4ea91299a34e894583c3862153e4b97
  • nf-core/setup-nextflow v3@893c28b667aedeba26e37f296d260ccc5bc4d914
  • nf-core/setup-nf-test v2@4069fbbaabe94c08faba4ad261bfa88225ba133f
  • ewels/rich-codex v1@1af970c6b6850d5870fed9041ac7a6337940fdc3 → [Updates: v1]
  • node 24
  • python 3.14
pre-commit (1)
.pre-commit-config.yaml (1)
  • pre-commit/mirrors-prettier v3.1.0
regex (2)
.pre-commit-config.yaml (3)
  • prettier 3.9.6 → [Updates: 3.9.7]
  • prettier-plugin-svelte 4.1.1
  • prettier-plugin-astro 0.14.1 → [Updates: 1.0.0]
.pre-commit-config.yaml (3)
  • prettier 3.9.6 → [Updates: 3.9.7]
  • prettier-plugin-svelte 4.1.1
  • prettier-plugin-astro 0.14.1 → [Updates: 1.0.0]
renovate-config (1)
.github/renovate.json5
  • Check this box to trigger a request for Renovate to run again on this repository

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start with the Renovate Dependency Dashboard and the referenced files, especially .pre-commit-config.yaml and .github/workflows/*.yml. Review the existing pull request #4397 before doing anything; the issue lists updates and abandoned dependencies but does not define a standalone change or completion condition.

Written by the indexing model from the issue text.

Assessment

Tech stack
docker, github-actions, node.js, python
Domain
build-system, ci-cd, devops
Issue type
Refactor
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
15/100

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