nf-core/rnadnavar

Pipeline for RNA and DNA integrated analysis for somatic mutation detection

Beginner friendly Everything

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7 open issues indexed

Fix samplesheet channel when `norm` step Open

bug good first issue help wanted

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

nf-core/rnadnavar#72 · Opened Mar 15, 2026
Fix CSV checkpoint files with correct folder structure Open

bug good first issue help wanted

Difficulty 3/5 1-2 days Newbie friendliness 35/100

nf-core/rnadnavar#71 · Opened Mar 15, 2026
GATK4_BASERECALIBRATOR java crash because common lang3 missing Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 35/100

nf-core/rnadnavar#69 · 2 comments · Opened Jan 27, 2026
Consensus crash Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 35/100

nf-core/rnadnavar#68 · 3 comments · Opened Jan 15, 2026
Add intervals test Open

enhancement

nf-core/rnadnavar#59 · 1 assignee · Opened Sep 9, 2025
Add tumour-only mode Open

enhancement help wanted

nf-core/rnadnavar#37 · 5 comments · 1 assignee · Opened Aug 1, 2024
Manage DNA-RNA combinations in the consensus through sample name instead of patient Open

enhancement

nf-core/rnadnavar#36 · 1 assignee · Opened Aug 1, 2024

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