nf-core/nft-utils

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nf-test utility functions

Stars: 13
Forks: 11
Open beginner issues: 0
Indexed issues: 14
Avg merge: 1d 16h
Merged PRs (30d): 6

Dominant language: Java
License: MIT
Last GitHub push: Sep 16, 2026
Latest indexed: Sep 19, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed

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14 open issues indexed

Stricter handling of nf-test outputs Open

Difficulty 4/5 3-5 days Newbie friendliness 52/100

nf-core/nft-utils#92 · 1 comment · Opened Sep 17, 2026
sanitizeOutput still hashes the CWD for empty strings in 1.1.1 Open

Difficulty 3/5 1-2 days Newbie friendliness 55/100

nf-core/nft-utils#87 · Opened Sep 8, 2026
Bubble up some more errors Open

Difficulty 3/5 1-2 days Newbie friendliness 55/100

nf-core/nft-utils#73 · Opened Jul 27, 2026
cleanup options Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

nf-core/nft-utils#67 · Opened Apr 24, 2026
Helper for pipeline level tests Open

Difficulty 5/5 Over a week Newbie friendliness 35/100

nf-core/nft-utils#66 · Opened Apr 9, 2026
filterNextflowOutput could benefit from some extra common patterns Open

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

nf-core/nft-utils#59 · 1 comment · Opened Dec 17, 2025
Wrong capture of hash with filterNextflowOutput Open

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

nf-core/nft-utils#58 · Opened Dec 17, 2025
Sane defaults for .nftignore files Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

nf-core/nft-utils#49 · 1 comment · Opened Sep 17, 2025
`getAllFilesFromDir()` examples are confusing due to incomaptibliity of `*.name` pattern and `relative: true` Open

Difficulty 1/5 Under an hour Newbie friendliness 55/100

nf-core/nft-utils#40 · Opened Jun 12, 2025
Function to remove specific lines from a file (and return an ArrayList) Open

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

nf-core/nft-utils#39 · 1 reaction · Opened Jun 11, 2025
getAllFilesFromDir `includeDir` and `exclude` pattern are not comaptible with each other Open

Difficulty 3/5 1-2 days Newbie friendliness 42/100

nf-core/nft-utils#33 · 1 comment · Opened Mar 21, 2025
Make a function to have a better syntax for snapshotting variable files in a channel emitting a directory Open

nf-core/nft-utils#32 · 1 assignee · Opened Feb 10, 2025
Function to get MD5sums of all files in directory that is an emitted element from a channel Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

nf-core/nft-utils#30 · 6 comments · Opened Jan 16, 2025
Function to recursively check all detected files for a specific string Open

nf-core/nft-utils#23 · 2 comments · 1 assignee · Opened Oct 11, 2024

nf-core/nft-utils

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