Standardize process inputs/outputs
Open
Nobody has claimed this yet.
enhancement
- Dominant language
- Nextflow
- Stars
- 9
- Forks
- 6
- PR merge metrics
- No merged PRs in 30d
Description
Description of feature
I wonder if we can standardize processes' inputs and outputs so that if a given step is being run optionally the other one will not break as for an example it does not contain row names in row names but in a different column - TBD
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by mapping the pipeline processes and documenting the current input and output shapes, especially where optional steps handle row names or place them in another column. Done means optional processes use compatible standardized inputs and outputs without breaking downstream steps.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100