Create subworkflows for a given process type
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enhancement
- Dominant language
- Nextflow
- Stars
- 9
- Forks
- 6
- PR merge metrics
- No merged PRs in 30d
Description
Description of feature
Preprocessing modules should go into its own subworkflow, same goes for adjusting batch effect and removal of confounding probes which depend on the phenotypes being present. Lastly we should optionally see a subworkflow for detecing differentially methylated probes/regions/blocks.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
No files, tests, or entry points are named. First map the existing preprocessing, batch-effect adjustment, confounding-probe removal, and differential-methylation workflow sections, then determine how each process type should be separated. Done means the requested process-specific subworkflows exist and the differential-methylation subworkflow remains optional.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100