nf-core / nf-core/methylarray

Split the single pipeline container which all processes use into containers used only in a given processes

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enhancement
Dominant language
Nextflow
Stars
9
Forks
6
PR merge metrics
No merged PRs in 30d

Description

Description of feature

All processes currently use a single container which was created using the Dockerfile found under assets/Docker. Optionally, we would have one container for a given process rather than one container for all processes in the pipeline.

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by inspecting the Dockerfile under assets/Docker and tracing how it is used by the pipeline's processes. Define the per-process container boundaries and verify that each process uses only its intended container while preserving the existing pipeline behavior.

Written by the indexing model from the issue text.

Assessment

Tech stack
docker
Domain
devops, infrastructure
Issue type
Feature
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

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