nf-core/detaxizer
View on GitHubA pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Removal is optional.
- Stars
- 24
- Forks
- 10
- Open beginner issues
- 0
- Indexed issues
- 9
- Dominant language
- Nextflow
- License
- MIT
- Last GitHub push
- Jul 27, 2026
- Latest indexed
- Sep 19, 2026
- Contributing guide
- Contributing guide
- Code of conduct
- Code of conduct
- Beginner labels
- No beginner labels indexed
- PR merge metrics
- No merged PRs in 30d
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Generated mag samplesheet is rejected by mag 5.5.0: empty `group`, missing `short_reads_platform` Openbug
Difficulty 2/5 1-3 hours Newbie friendliness 86/100
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bug
Difficulty 2/5 1-3 hours Newbie friendliness 78/100
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enhancement
Difficulty 3/5 1-2 days Newbie friendliness 45/100
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enhancement
Difficulty 4/5 3-5 days Newbie friendliness 35/100
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documentation
Difficulty 4/5 3-5 days Newbie friendliness 35/100
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enhancement
Difficulty 4/5 3-5 days Newbie friendliness 35/100
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enhancement
Difficulty 3/5 1-2 days Newbie friendliness 45/100
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enhancement
Difficulty 4/5 3-5 days Newbie friendliness 35/100
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enhancement
Difficulty 3/5 1-2 days Newbie friendliness 45/100