nf-core/circdna

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Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from cancer and other eukaryotic cells.

Stars: 35
Forks: 18
Open beginner issues: 0
Indexed issues: 3

Dominant language: Python
License: MIT
Last GitHub push: Jul 27, 2026
Latest indexed: Sep 19, 2026
Contributing guide: Contributing guide
Code of conduct: Code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

Beginner friendly Everything

Open All

3 open issues indexed

JSON schema: Circdna Open

documentation

Difficulty 4/5 3-5 days Newbie friendliness 45/100

nf-core/circdna#86 · Opened Mar 25, 2025
Error executing process > 'NFCORE_CIRCDNA:CIRCDNA:CIRCLEMAP_REALIGN Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 25/100

nf-core/circdna#73 · 3 comments · Opened Apr 19, 2024
How about to change circle-map to C++ version? Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 35/100

nf-core/circdna#66 · 3 comments · Opened Jan 25, 2024

nf-core/circdna

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