neurobagel/api

View on GitHub

Stars: 7
Forks: 10
Open beginner issues: 0
Indexed issues: 26
Avg merge: 4d 1h
Merged PRs (30d): 8

Dominant language: Python
License: MIT
Last GitHub push: Sep 18, 2026
Latest indexed: Sep 20, 2026
Contributing guide: Contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed

Beginner friendly Everything

Open All

26 open issues indexed

Complete GH security checklist Open

neurobagel/api#600 · 1 assignee · Opened Sep 16, 2026
Ensure empty data in query response str fields work with pandas>=3 Open

Difficulty 3/5 1-2 days Newbie friendliness 52/100

neurobagel/api#599 · Opened Sep 10, 2026
Update tests and default Neurobagel query file to use `bids` instead of `nidm` terms Open

_flag:stale

Difficulty 3/5 1-2 days Newbie friendliness 42/100

neurobagel/api#562 · 1 comment · Opened Apr 16, 2026
Environment Setup: pandas==1.5.2 fails to install on Python 3.12 Open

_flag:stale dependencies

Difficulty 2/5 1-3 hours Newbie friendliness 68/100

neurobagel/api#536 · 2 comments · Opened Feb 27, 2026
Add caching for vocabulary fetching to improve API startup reliability Open

_flag:stale

Difficulty 4/5 3-5 days Newbie friendliness 48/100

neurobagel/api#534 · 1 comment · Opened Feb 26, 2026
Revisit what `POST /subjects` response should be for a protected/aggregated node Open

_flag:stale flag:discuss

Difficulty 5/5 Over a week Newbie friendliness 15/100

neurobagel/api#516 · 1 comment · Opened Dec 19, 2025
Consider standardizing the fields between the instances endpoints Open

_flag:stale

Difficulty 4/5 3-5 days Newbie friendliness 32/100

neurobagel/api#514 · 1 comment · Opened Dec 5, 2025
Align identifiers in code to current Neurobagel naming conventions Open

_flag:stale refactor

Difficulty 4/5 3-5 days Newbie friendliness 45/100

neurobagel/api#512 · 4 comments · Opened Dec 3, 2025
Make API version and node info discoverable Open

_flag:stale usability

Difficulty 3/5 1-2 days Newbie friendliness 48/100

neurobagel/api#511 · 4 comments · Opened Dec 3, 2025
Disallow extra parameters or fields in queries Open

_flag:stale refactor

Difficulty 3/5 1-2 days Newbie friendliness 45/100

neurobagel/api#492 · 7 comments · Opened Nov 3, 2025
Refactor startup events Open

_flag:stale refactor

Difficulty 3/5 1-2 days Newbie friendliness 68/100

neurobagel/api#473 · 2 comments · Opened Sep 10, 2025
Add e2e test of `dataset_uuids` field for POST `/subjects` endpoint Open

_flag:stale tests

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

neurobagel/api#446 · 1 comment · Opened May 25, 2025
Remove `NB_API_ALLOWED_ORIGINS` Open

quick fix

Difficulty 4/5 3-5 days Newbie friendliness 38/100

neurobagel/api#410 · 4 comments · Opened Feb 13, 2025
Add explaining comment about why we have all these OPTIONAL statements for session attributes Open

_flag:stale documentation usability

neurobagel/api#409 · 2 comments · 1 assignee · Opened Feb 5, 2025
Test all possible data types that might exist in a graph Open

_flag:stale

Difficulty 4/5 3-5 days Newbie friendliness 38/100

neurobagel/api#371 · 1 comment · Opened Oct 28, 2024
Graph response formatting fails when no pipeline data is in the database Open

Epic

Difficulty 4/5 3-5 days Newbie friendliness 35/100

neurobagel/api#367 · 5 comments · 1 reaction · Opened Oct 25, 2024
Expand error catching for request to graph Open

_flag:stale usability

Difficulty 4/5 3-5 days Newbie friendliness 35/100

neurobagel/api#303 · 2 comments · Opened Apr 12, 2024
Provide way for user to indicate agreement to a data usage agreement Open

flag:detail needed someday

Difficulty 4/5 3-5 days Newbie friendliness 30/100

neurobagel/api#268 · 3 comments · Opened Jan 25, 2024
Split subject-level data list in API response into imaging and phenotypic session arrays Open

someday

Difficulty 3/5 1-2 days Newbie friendliness 35/100

neurobagel/api#263 · 1 comment · Opened Jan 22, 2024
Allowing queries for both healthy controls and a specific diagnosis Open

flag:discuss someday

Difficulty 5/5 Over a week Newbie friendliness 25/100

neurobagel/api#247 · 1 comment · Opened Dec 13, 2023
Take a look at INCATools for ontology / vocabulary searches Open

flag:discuss phase:research someday

Difficulty 5/5 Over a week Newbie friendliness 20/100

neurobagel/api#207 · 1 comment · Opened Oct 24, 2023
Create endpoint for uploading data to the graph Open

someday

Difficulty 4/5 3-5 days Newbie friendliness 35/100

neurobagel/api#203 · 1 comment · Opened Oct 17, 2023
Support additional variables Open

someday

Difficulty 4/5 3-5 days Newbie friendliness 35/100

neurobagel/api#138 · 2 comments · 1 reaction · Opened Aug 1, 2023
Write a test that default values of env vars are correctly applied Open

someday tests

Difficulty 4/5 3-5 days Newbie friendliness 35/100

neurobagel/api#127 · 1 comment · Opened May 26, 2023
Implement CD of API on cloud server Open

someday usability

Difficulty 4/5 3-5 days Newbie friendliness 35/100

neurobagel/api#110 · 1 comment · Opened May 11, 2023
What should we return to a user for pheno-only subjects Open

someday

Difficulty 5/5 Over a week Newbie friendliness 25/100

neurobagel/api#84 · 5 comments · Opened Feb 14, 2023

neurobagel/api

Get new issues in your inbox