The results of diploid and aneuploid are reversed in test_copykat_heatmap.jpeg, why?
Nobody has claimed this yet.
Assessment
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Newbie friendliness
- 25/100
- Issue type
- Bug
- Clarity
- Needs clarification
- Activity status
- Stale
- Tech stack
- r
- Domain
- bioinformatics
Research direction
Reproduce the issue with the provided copykat() call and inspect test_copykat_heatmap.jpeg alongside the returned copykat.test object. Trace how diploid and aneuploid labels are assigned and rendered in the heatmap, then verify the behavior across runs. Done means the displayed labels consistently match the underlying classifications or the cause of any intentional reversal is documented.
Written by the indexing model from the issue text.
Description
Sorry to bother you, when I run the following code:
copykat.test <- copykat(rawmat=exp.rawdata,
id.type="S",
ngene.chr=5,
win.size=25,
KS.cut=0.1,
sam.name="test",
distance="euclidean",
norm.cell.names="",
output.seg="FLASE",
plot.genes="TRUE",
genome="hg20",
n.cores=4)
Sometimes, the results of diploid and aneuploid were logical in the test_copykat_heatmap.jpeg; while sometimes the results of diploid and aneuploid were reverse in the test_copykat_heatmap.jpeg. Which should be aneuploid , but titled with diploid. Can you tell me why this happend and how to solve it. Best wish
- Dominant language
- R
- Stars
- 305
- Forks
- 66
- PR merge metrics
- No merged PRs in 30d
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
More from navinlabcode/copykat
-
Difficulty 4/5 3-5 days Newbie friendliness 35/100
navinlabcode/copykat#141 · 1 comment ·
-
License discrepency Open
Difficulty 4/5 3-5 days Newbie friendliness 35/100
navinlabcode/copykat#140 ·
-
Difficulty 5/5 Over a week Newbie friendliness 25/100
navinlabcode/copykat#138 · 3 comments ·
-
Difficulty 5/5 Over a week Newbie friendliness 25/100
navinlabcode/copykat#137 ·
-
InferCNA plot logic Open
Difficulty 3/5 1-2 days Newbie friendliness 25/100
navinlabcode/copykat#136 ·
All issues in navinlabcode/copykat
Similar issues
-
Difficulty 2/5 1-3 hours Newbie friendliness 82/100
r-lib/pkgdepends#485 · 3 comments ·
-
Difficulty 1/5 Under an hour Newbie friendliness 92/100
-
beginners blocker
Difficulty 2/5 1-3 hours Newbie friendliness 78/100
-
enviPathR OpenBuild Error Build OK Build Warning policies-accepted pre-review precheck-passed
Difficulty 1/5 Under an hour Newbie friendliness 84/100
Bioconductor/BiocContributions#207 · 6 comments ·
-
Difficulty 2/5 1-3 hours Newbie friendliness 74/100
datacarpentry/semester-biology#1255 ·