Is there any way to make re-analysis easier when change the parameter KS.cut?
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Assessment
- Difficulty
- 5/5
- Estimated time
- Over a week
- Newbie friendliness
- 25/100
- Issue type
- Feature
- Clarity
- Needs clarification
- Activity status
- Stale
- Tech stack
- r
- Domain
- bioinformatics
Research direction
Start by reviewing the copykat() entry point and how the KS.cut parameter is applied during analysis. Define a way to change KS.cut and re-analyze existing results without rerunning the full copykat() function, then verify that users can obtain different tumor-cell selections efficiently.
Written by the indexing model from the issue text.
Description
Hey,
Sometime I need to change KS.cut to get more or less tumor cells. However, each time I have to run the copykat() funtion just for changing KS.cut. It took me a lot time. Do you have any method to make it easy for users?
Thanks!
- Dominant language
- R
- Stars
- 305
- Forks
- 66
- PR merge metrics
- No merged PRs in 30d
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