what reason of copykat analysis one sample compare to different samples with different result

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Assessment

Difficulty
4/5
Estimated time
3-5 days
Newbie friendliness
25/100
Issue type
Bug
Clarity
Needs clarification
Activity status
Stale
Tech stack
r
Domain
bioinformatics

Research direction

No files, tests, or specific CopyKAT entry points are named. Start by reproducing the analyses for sampleA with sampleB and sampleC, recording the inputs and settings for each run; done means identifying a reproducible cause for the conflicting ploidy classifications or documenting the missing information needed to investigate it.

Written by the indexing model from the issue text.

Description

Hi,
I used copykat to analyse sampleA and sampleB, result A is diploid and B is aneuploid, but when I analyse sampleA and sampleC, result result A is aneuploid and C is diploid.

so what is the reason case this problem

Dominant language
R
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305
Forks
66
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