Help with identifying true CNVs from false
Nobody has claimed this yet.
Assessment
- Difficulty
- 5/5
- Estimated time
- Over a week
- Newbie friendliness
- 10/100
- Issue type
- Documentation
- Clarity
- Needs clarification
- Activity status
- Stale
- Tech stack
- r
- Domain
- bioinformatics
Research direction
No source files, tests, or entry points are identified. Start by reviewing the attached heatmap and the reported CopyKAT analysis context; the issue would be complete only when the cause of the apparent CNVs is established and the interpretation is documented.
Written by the indexing model from the issue text.
Description
Hi,
I have performed copykat analysis for immune cells (green bar in the heatmap) and non-immune cells(orange bar in the heatmap). Based on this it looks like the non-immune cells would be loaded with CNVs. I am wondering if there's some biological reason for this or would you say that this or is a true finding? The cells are all from the same sample, so no batch effects are possible.
- Dominant language
- R
- Stars
- 305
- Forks
- 66
- PR merge metrics
- No merged PRs in 30d
Contributor guide
No contributing guide indexed for this repository
First steps
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