nanoporetech / nanoporetech/minknow_api
Query pore activity
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- Dominant language
- Python
- Stars
- 73
- Forks
- 16
- PR merge metrics
- No merged PRs in 30d
Description
Is there a way to query the pore activity? For instance, in this example I would like a way to get the attributes for [sequencing, pore, recovering, inactive, unclassified]. The goal is to be able to record the pore occupancy percentage, which should be (sequencing+recovering)/(sequencing+recovering+pore), so I can use a route if that is implemented elsewhere.
Contributor guide
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
No source file, test, or entry point is named in issue #47. Start by locating the existing MinKNOW API routes for pore state or activity and review the linked example; done means a documented query exposes the requested pore-state attributes and supports calculating pore occupancy.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- grpc, python
- Domain
- api
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 28/100