mskcc / mskcc/beagle

QOL/API/beagle_cli Improvements

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#35 1 comment 0 reactions 0 assignees View on GitHub

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Dominant language
Python
Stars
2
Forks
7
Avg merge
4d 58m
Merged PRs (30d)
7

Description

Need to add QOL changes to API

beagle_cli.py additions

  • Fix (see #28 and #27)
  • Add commands for etl/import-requests and run/request
  • Command for creating/listing runs
  • When pulling metadata, unpaginate results for igoId/cmoSampleName queries

Contributor guide

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First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start with beagle_cli.py and review issues #28 and #27 for the requested fix. Identify the existing command patterns before addressing etl/import-requests, run/request, run creation and listing, and metadata pagination for igoId/cmoSampleName queries. Done means the listed CLI improvements are implemented and their behavior is verified.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
api, cli
Issue type
Feature
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

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