Owner

mskcc

6 indexed repositories · View on GitHub

igo-lims-plugins
Sapio LIMS customizations to workflows for IGO

Java · 2 stars
smile-server

Java · 2 stars
beagle
Voyager Backend

Python · 2 stars
igo-genomics

Vue · 1 star
toxicology

R · 0 stars
igo-sample-submission-node
Sample Submission API written in node.js

JavaScript · 0 stars

Beginner friendly Everything

Open All

[dashboard] implement method for viewing latest report of candidate MSKWESRP samples Open

Dashboard Development

Difficulty 4/5 3-5 days Newbie friendliness 48/100

mskcc/smile-server#1965 · Opened Sep 17, 2026
Implement the R scripts viz work into a protoype for cbioportal-frontend Open

Pipelines/cBioPortal

Difficulty 4/5 3-5 days Newbie friendliness 25/100

mskcc/smile-server#1964 · Opened Sep 17, 2026
RFC doc for supporting FACETS in the cBioPortal Open

documentation Pipelines/cBioPortal

Difficulty 5/5 Over a week Newbie friendliness 30/100

mskcc/smile-server#1963 · Opened Sep 17, 2026
Confirm (or update) NATs jetstream permissions to allow dashboard to pub to request update topic Open

NATS Server Administration SMILE Server Development

Difficulty 3/5 1-2 days Newbie friendliness 35/100

mskcc/smile-server#1962 · Opened Sep 17, 2026
FACETS viz prototyping documentation Open

documentation Pipelines/cBioPortal

Difficulty 3/5 1-2 days Newbie friendliness 55/100

mskcc/smile-server#1961 · Opened Sep 16, 2026
sync dev neo4j to prod neo4j Open

neo4j SMILE DevOps

Difficulty 4/5 3-5 days Newbie friendliness 35/100

mskcc/smile-server#1960 · Opened Sep 16, 2026
[smile-server] Update CohortComplete node with "PI Name" Open

DEPLOYED side-quest SMILE Server Development

Difficulty 3/5 1-2 days Newbie friendliness 68/100

mskcc/smile-server#1950 · Opened Aug 21, 2026
FACETS schema changes for cbioportal Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

mskcc/smile-server#1941 · Opened Aug 19, 2026
FACETS schema changes for cbioportal Open

Difficulty 4/5 3-5 days Newbie friendliness 30/100

mskcc/smile-server#1939 · Opened Aug 19, 2026
RFC - FACETS schema changes for cbioportal Open

Difficulty 5/5 Over a week Newbie friendliness 30/100

mskcc/smile-server#1937 · Opened Aug 19, 2026
Multiplex Samples Support in SMILE Open

Dashboard Development Epic SMILE Server Development

Difficulty 5/5 Over a week Newbie friendliness 25/100

mskcc/smile-server#1933 · Opened Aug 13, 2026
Schema updates for microbiome support Open

Microbiome

Difficulty 4/5 3-5 days Newbie friendliness 20/100

mskcc/smile-server#1915 · Opened Jul 23, 2026
Update mismatching samples where incorrect MRN may have been submitted at submission Open

Data Request external-dependencies Paused

Difficulty 4/5 3-5 days Newbie friendliness 25/100

mskcc/smile-server#1905 · Opened Jul 9, 2026
Identification of MSKWESRP candidate samples Open

Dashboard Development enhancement Epic SMILE Server Development TEMPO Cohort Building

Difficulty 5/5 Over a week Newbie friendliness 30/100

mskcc/smile-server#1903 · Opened Jul 8, 2026
Fingerprinting follow up with WES samples that have mismatching DMP patient IDs/CMO patient IDs Open

Data Request

Difficulty 4/5 3-5 days Newbie friendliness 28/100

mskcc/smile-server#1900 · Opened Jul 1, 2026
cbioportal importer support - db schema updates to support new visualizations Open

TEMPO-cBio Pipeline

Difficulty 5/5 Over a week Newbie friendliness 25/100

mskcc/smile-server#1883 · Opened Jun 3, 2026
SMILE-TEMPO pipeline Open

Difficulty 5/5 Over a week Newbie friendliness 10/100

mskcc/smile-server#1880 · Opened Jun 3, 2026
TEMPO-cBio Pipeline Open

Epic TEMPO-cBio Pipeline

Difficulty 5/5 Over a week Newbie friendliness 25/100

mskcc/smile-server#1877 · Opened Jun 3, 2026
AI-assisted Sample validation error report improvements Open

Dashboard Development enhancement

Difficulty 5/5 Over a week Newbie friendliness 35/100

mskcc/smile-server#1838 · Opened Apr 2, 2026
Remove all harded references to juno Open

Difficulty 2/5 1-3 hours Newbie friendliness 68/100

mskcc/beagle#1500 · Opened Mar 23, 2026
How will strict syntax affect repo Open

mskcc/beagle#1493 · 1 assignee · Opened Feb 19, 2026
PM redaction (prev on HERA) Open

Dashboard Development

Difficulty 4/5 3-5 days Newbie friendliness 35/100

mskcc/smile-server#1798 · Opened Feb 11, 2026
Preliminary DMP tracker WES ID work Open

DMP request process support Paused

Difficulty 3/5 1-2 days Newbie friendliness 45/100

mskcc/smile-server#1795 · Opened Feb 5, 2026
Enable automated checks for DMP tracker records Open

Dashboard Development DMP request process support

Difficulty 4/5 3-5 days Newbie friendliness 40/100

mskcc/smile-server#1786 · Opened Jan 28, 2026
Remove, hide, or de-prioritize non-actionable or obsolete fields for DMP sample tracker after legacy data is uploaded Open

DMP request process support external-dependencies

Difficulty 5/5 Over a week Newbie friendliness 25/100

mskcc/smile-server#1784 · Opened Jan 23, 2026
Track and surface downstream feedback (e.g., depleted or insufficient samples) from DMP back to PMs. Open

DMP request process support

Difficulty 5/5 Over a week Newbie friendliness 15/100

mskcc/smile-server#1783 · Opened Jan 23, 2026
Add mechanism for flagging DMP request as reviewed and submitted to DMP Open

Dashboard Development DMP request process support

Difficulty 5/5 Over a week Newbie friendliness 30/100

mskcc/smile-server#1782 · Opened Jan 23, 2026
Surface relevant metadata for DMP tracker records Open

Dashboard Development DMP request process support Paused

Difficulty 4/5 3-5 days Newbie friendliness 35/100

mskcc/smile-server#1781 · Opened Jan 23, 2026
Support file-upload from SMILE Open

Dashboard Development DMP request process support

Difficulty 5/5 Over a week Newbie friendliness 25/100

mskcc/smile-server#1780 · Opened Jan 23, 2026
Refine DMP tracker data model after identifying/removing non-actionable and obsolete fields Open

DMP request process support

Difficulty 5/5 Over a week Newbie friendliness 25/100

mskcc/smile-server#1779 · Opened Jan 23, 2026
Ingest data dump of legacy DMP tracker data Open

DMP request process support external-dependencies

Difficulty 5/5 Over a week Newbie friendliness 20/100

mskcc/smile-server#1778 · Opened Jan 23, 2026
Add DMP tracker view to SMILE dashboard (legacy data) Open

DMP request process support Paused

Difficulty 5/5 Over a week Newbie friendliness 15/100

mskcc/smile-server#1777 · Opened Jan 23, 2026
Enforce approved language/fixed options for changelog in dashboard Open

Dashboard Development external-dependencies

Difficulty 4/5 3-5 days Newbie friendliness 30/100

mskcc/smile-server#1772 · Opened Jan 21, 2026
Links in setup seem to point to old site Open

Difficulty 1/5 Under an hour Newbie friendliness 55/100

mskcc/toxicology#29 · Opened Jan 20, 2026
Incorporating DMP request tracking into SMILE Open

DMP request process support

Difficulty 5/5 Over a week Newbie friendliness 10/100

mskcc/smile-server#1762 · Opened Jan 9, 2026
Codifying WES ID generation Open

DMP request process support

Difficulty 5/5 Over a week Newbie friendliness 25/100

mskcc/smile-server#1761 · Opened Jan 9, 2026
Identification of duplicate samples/pre-existing data Open

DMP request process support

Difficulty 5/5 Over a week Newbie friendliness 25/100

mskcc/smile-server#1760 · Opened Jan 9, 2026
DMP request process support Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

mskcc/smile-server#1759 · Opened Jan 9, 2026
SMILE DevOps Open

SMILE DevOps

Difficulty 5/5 Over a week Newbie friendliness 10/100

mskcc/smile-server#1755 · Opened Jan 7, 2026
MISC/New Features Open

Difficulty 5/5 Over a week Newbie friendliness 10/100

mskcc/smile-server#1754 · Opened Jan 7, 2026
Auditing Sample Data Changes Open

Epic

Difficulty 5/5 Over a week Newbie friendliness 10/100

mskcc/smile-server#1753 · Opened Jan 7, 2026
SMILE DevOps 2026 Open

SMILE DevOps

Difficulty 5/5 Over a week Newbie friendliness 10/100

mskcc/smile-server#1746 · Opened Jan 6, 2026
Dashboard Development 2026 Open

Dashboard Development

Difficulty 5/5 Over a week Newbie friendliness 10/100

mskcc/smile-server#1745 · Opened Jan 6, 2026
SMILE Server Development 2026 Open

SMILE Server Development

Difficulty 5/5 Over a week Newbie friendliness 10/100

mskcc/smile-server#1744 · Opened Jan 6, 2026
Data Requests 2026 Open

Data Request

Difficulty 5/5 Over a week Newbie friendliness 10/100

mskcc/smile-server#1742 · Opened Jan 6, 2026
Test import data dump from microbiome team Open

Microbiome

Difficulty 4/5 3-5 days Newbie friendliness 15/100

mskcc/smile-server#1723 · Opened Dec 10, 2025
Add message handler for importing microbiome requests and samples Open

Microbiome

Difficulty 5/5 Over a week Newbie friendliness 20/100

mskcc/smile-server#1722 · Opened Dec 10, 2025
Add pub/sub topic for importing microbiome requests and samples Open

Microbiome

Difficulty 4/5 3-5 days Newbie friendliness 35/100

mskcc/smile-server#1721 · Opened Dec 10, 2025
Sample Submission Prototyping Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

mskcc/smile-server#1711 · Opened Oct 30, 2025
Revert F-F label updates (Jen to provide list) Open

Data Request external-dependencies

Difficulty 5/5 Over a week Newbie friendliness 10/100

mskcc/smile-server#1709 · Opened Oct 29, 2025

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