error configure in ubuntu system

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Assessment

Difficulty
4/5
Estimated time
3-5 days
Newbie friendliness
20/100
Issue type
Bug
Clarity
Needs clarification
Activity status
Stale
Tech stack
cpp, node.js
Domain
build-system

Research direction

Reproduce the global npm install with Node v0.12.0 and node-gyp 1.0.2, then inspect src/atom.cpp at the reported line and the generated build output. Check the package's supported Node/V8 versions and build requirements. Done means the openbabel package installs successfully on Ubuntu without the reported compilation failure.

Written by the indexing model from the issue text.

Description

$ npm install openbabel -g
/

openbabel@1.2.3 install /home/register/sf_install/node/lib/node_modules/openbabel
node-gyp rebuild

child_process: customFds option is deprecated, use stdio instead.
make: Entering directory /home/register/sf_install/node/lib/node_modules/openbabel/build' CXX(target) Release/obj.target/openbabel/src/atom.o In file included from ../src/atom.cpp:1:0: /home/register/.node-gyp/0.12.0/deps/v8/include/v8.h: In static member function ‘static void v8::NonCopyablePersistentTraits<T>::Uncompilable() [with O = v8::Object, T = v8::Object]’: /home/register/.node-gyp/0.12.0/deps/v8/include/v8.h:592:5: instantiated from ‘static void v8::NonCopyablePersistentTraits<T>::Copy(const v8::Persistent<S, M>&, v8::NonCopyablePersistentTraits<T>::NonCopyablePersistent*) [with S = v8::Object, M = v8::NonCopyablePersistentTraits<v8::Object>, T = v8::Object, v8::NonCopyablePersistentTraits<T>::NonCopyablePersistent = v8::Persistent<v8::Object>]’ /home/register/.node-gyp/0.12.0/deps/v8/include/v8.h:5826:3: instantiated from ‘void v8::Persistent<T, M>::Copy(const v8::Persistent<S, M>&) [with S = v8::Object, M2 = v8::NonCopyablePersistentTraits<v8::Object>, T = v8::Object, M = v8::NonCopyablePersistentTraits<v8::Object>]’ /home/register/.node-gyp/0.12.0/deps/v8/include/v8.h:657:5: instantiated from ‘v8::Persistent<T, M>::Persistent(const v8::Persistent<T, M>&) [with T = v8::Object, M = v8::NonCopyablePersistentTraits<v8::Object>, v8::Persistent<T, M> = v8::Persistent<v8::Object>]’ ../src/atom.cpp:90:46: instantiated from here /home/register/.node-gyp/0.12.0/deps/v8/include/v8.h:596:5: error: cannot convert ‘v8::Primitive*’ to ‘v8::Object* volatile’ in assignment make: *** [Release/obj.target/openbabel/src/atom.o] Error 1 make: Leaving directory/home/register/sf_install/node/lib/node_modules/openbabel/build'
gyp ERR! build error
gyp ERR! stack Error: make failed with exit code: 2
gyp ERR! stack at ChildProcess.onExit (/home/register/sf_install/node/lib/node_modules/npm/node_modules/node-gyp/lib/build.js:267:23)
gyp ERR! stack at ChildProcess.emit (events.js:110:17)
gyp ERR! stack at Process.ChildProcess._handle.onexit (child_process.js:1067:12)
gyp ERR! System Linux 3.5.0-23-generic
gyp ERR! command "node" "/home/register/sf_install/node/lib/node_modules/npm/node_modules/node-gyp/bin/node-gyp.js" "rebuild"
gyp ERR! cwd /home/register/sf_install/node/lib/node_modules/openbabel
gyp ERR! node -v v0.12.0
gyp ERR! node-gyp -v v1.0.2
gyp ERR! not ok
npm ERR! Linux 3.5.0-23-generic
npm ERR! argv "/home/register/sf_install/node/bin/node" "/home/register/sf_install/node/bin/npm" "install" "openbabel" "-g"
npm ERR! node v0.12.0
npm ERR! npm v2.5.1
npm ERR! code ELIFECYCLE

npm ERR! openbabel@1.2.3 install: node-gyp rebuild
npm ERR! Exit status 1
npm ERR!
npm ERR! Failed at the openbabel@1.2.3 install script 'node-gyp rebuild'.
npm ERR! This is most likely a problem with the openbabel package,
npm ERR! not with npm itself.
npm ERR! Tell the author that this fails on your system:
npm ERR! node-gyp rebuild
npm ERR! You can get their info via:
npm ERR! npm owner ls openbabel
npm ERR! There is likely additional logging output above.

npm ERR! Please include the following file with any support request:
npm ERR! /home/register/sf_install/node/lib/node_modules/npm/npm-debug.log

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