Using transport="stdio" closes real stdio, causing ValueError after server exits

Initial Checks

• I confirm that I'm using the latest version of MCP Python SDK
• I confirm that I searched for my issue in https://github.com/modelcontextprotocol/python-sdk/issues before opening this issue

Description

Hi! I ran into an issue where running the server with transport="stdio" causes subsequent stdio operations to fail after the server exits.

Minimal reproduction

from mcp.server.fastmcp import FastMCP

mcp = FastMCP("Demo")
mcp.run(transport="stdio")
print("?")

When using Ctrl+D to exit the server, the final print raises:

Traceback (most recent call last):
  File "...", line 5, in <module>
    print("?")
ValueError: I/O operation on closed file.

I’m not sure if this is intended behavior though.

Likely cause

In stdio.py, stdio is wrapped like this:
https://github.com/modelcontextprotocol/python-sdk/blob/5301298225968ce0fa8ae62870f950709da14dc6/src/mcp/server/stdio.py#L44-L47

When these wrappers are closed, they also close the sys.stdin.buffer / sys.stdout.buffer.

Proposed fix

    if not stdin:
        stdin_fd = os.dup(sys.stdin.fileno())
        stdin_bin = os.fdopen(stdin_fd, "rb", closefd=True)
        stdin = anyio.wrap_file(TextIOWrapper(stdin_bin, encoding="utf-8"))
    if not stdout:
        stdout_fd = os.dup(sys.stdout.fileno())
        stdout_bin = os.fdopen(stdout_fd, "wb", closefd=True)
        stdout = anyio.wrap_file(TextIOWrapper(stdout_bin, encoding="utf-8"))

Python & MCP Python SDK

Python 3.10.15
mcp==1.25.0

Commencez dans src/mcp/server/stdio.py, autour de la configuration du wrapper aux lignes indiquées, puis exécutez la reproduction minimale de FastMCP fournie dans l’issue. Vérifiez que la fermeture des wrappers stdio ne ferme plus les flux standard réels du processus, et vérifiez que le print final s’exécute correctement après l’arrêt du serveur.