lpantano/DEGreport

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Create a cromphensive report of DEG list coming from any analysis of RNAseq data

Stars: 30
Forks: 19
Open beginner issues: 0
Indexed issues: 18

Dominant language: R
License: MIT
Last GitHub push: Oct 11, 2025
Latest indexed: Sep 19, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

Beginner friendly Everything

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18 open issues indexed

degCovariates has inconsistent documentation Open

Difficulty 3/5 1-2 days Newbie friendliness 52/100

lpantano/DEGreport#70 · 1 comment · Opened Jul 19, 2026
degQC, ggplot2::labels Error Open

Difficulty 3/5 1-2 days Newbie friendliness 42/100

lpantano/DEGreport#69 · 1 comment · Opened Oct 17, 2025
Connecting dots and lines in degPlotCluster() Open

Difficulty 3/5 1-2 days Newbie friendliness 38/100

lpantano/DEGreport#66 · 1 comment · Opened Aug 30, 2024
New genes that did not exist in dds object suddenly showed up after degPatterns Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

lpantano/DEGreport#65 · 1 comment · Opened Mar 28, 2024
Clarification with degMerge function Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

lpantano/DEGreport#64 · 1 comment · Opened Mar 27, 2024
`degCovariates`: breaking change in dplyr filter code Open

Difficulty 3/5 1-2 days Newbie friendliness 30/100

lpantano/DEGreport#36 · 6 comments · Opened Jun 26, 2020
How to re-cluster in each group for DEGpattern? Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

lpantano/DEGreport#35 · 1 reaction · Opened Jun 24, 2020
Can we order the top N genes within degplot Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

lpantano/DEGreport#33 · 5 comments · Opened May 30, 2020
degCovariates ERROR Open

Difficulty 3/5 1-2 days Newbie friendliness 28/100

lpantano/DEGreport#32 · 1 comment · Opened Apr 17, 2020
error message Open

Difficulty 4/5 3-5 days Newbie friendliness 18/100

lpantano/DEGreport#30 · 1 comment · Opened Mar 31, 2020
Add prefix to the title plot Open

Difficulty 2/5 1-3 hours Newbie friendliness 58/100

lpantano/DEGreport#29 · Opened Jan 7, 2020
degPatterns results exists unsimilar pattern in a cluster Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

lpantano/DEGreport#28 · 1 comment · Opened Aug 25, 2019
degCheckFactors error Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

lpantano/DEGreport#23 · 4 comments · Opened Jan 7, 2019
Adapt DEGSet to limma output Open

analysis internal

Difficulty 5/5 Over a week Newbie friendliness 20/100

lpantano/DEGreport#20 · Opened Sep 6, 2017
Add DEGresults examples to vignette Open

bug internal

Difficulty 3/5 1-2 days Newbie friendliness 35/100

lpantano/DEGreport#16 · Opened Aug 24, 2017
degPCA to have only ma as input Open

enhancement plots

Difficulty 4/5 3-5 days Newbie friendliness 25/100

lpantano/DEGreport#11 · Opened Jun 2, 2017
add function for co-expression analyais glbio17 Open

analysis enhancement

Difficulty 5/5 Over a week Newbie friendliness 20/100

lpantano/DEGreport#8 · 1 comment · Opened May 18, 2017
add glm models Open

lpantano/DEGreport#1 · 1 assignee · Opened Sep 21, 2014

lpantano/DEGreport

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