[ESI] Replace `FlattenStructPorts` with per-module attribute and flatten-io pass
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@mortbopet is already working on this.
Since Jul 12, 2023.
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Description
As per the discussion in https://github.com/llvm/circt/pull/5533.
Should be used to re-enable this test https://github.com/llvm/circt/commit/f1148efe1c5396925179c31c8c5e02563d896445
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