lazear/sage

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Proteomics search & quantification so fast that it feels like magic

Stars: 309
Forks: 66
Open beginner issues: 0
Indexed issues: 10

Dominant language: Rust
License: MIT
Last GitHub push: Sep 17, 2026
Latest indexed: Sep 18, 2026
Contributing guide: Contributing guide
Code of conduct: Code of conduct
Beginner labels: good first issue
PR merge metrics: No merged PRs in 30d

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10 open issues indexed

Is support for SILAC or reductive dimethylation quantification planned Open

enhancement

lazear/sage#89 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 18, 2026
Feature request: peptide position information in results Open

enhancement good first issue

lazear/sage#110 · 1 comment · 1 reaction · 0 assignees · Indexed Sep 18, 2026
Search using parquet files Open

lazear/sage#125 · 4 comments · 0 reactions · 0 assignees · Indexed Sep 18, 2026
Large peptide ID number differences between v14.6 and v15.1 Open

lazear/sage#183 · 11 comments · 0 reactions · 0 assignees · Indexed Sep 18, 2026
Publish crates to crates.io Open

lazear/sage#191 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 18, 2026
Sage fails silently if the protein database does not contain decoys in combination with `"generate_decoys": false` Open

lazear/sage#192 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 18, 2026
JSON schema for config.json file as schema file Open

lazear/sage#193 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 18, 2026
Named PTMs support Open

enhancement

lazear/sage#219 · 5 comments · 0 reactions · 0 assignees · Indexed Sep 18, 2026
Feature request: per-modification occurrence limits and a total variable-mod combination cap Open

lazear/sage#231 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 18, 2026
mzML parser ignores `referenceableParamGroupRef` Open

lazear/sage#232 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 18, 2026

lazear/sage

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