ivadomed / ivadomed/model-spinal-rootlets
Update path to env with nnunet
- Dominant language
- Python
- Stars
- 8
- Forks
- 2
- PR merge metrics
- No merged PRs in 30d
Description
The following lines can be updated because SCT conda env now contains nnUNet. The path to SCT python is: `$SCT_DIR/python/envs/venv_sct/bin/python`
https://github.com/ivadomed/model-spinal-rootlets/blob/8922091c052a381f47fea56053e9d18d6a5dea4f/inter-rater_variability/02_run_batch_inter_rater_variability.sh#L100-L102
Contributor guide
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Research direction
Open inter-rater_variability/02_run_batch_inter_rater_variability.sh and inspect lines 100-102, which reference the Python environment used by nnUNet. Verify the SCT environment path given in the issue, update the outdated reference, and run the batch script to confirm it uses the available nnUNet environment.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python, shell
- Domain
- machine-learning
- Issue type
- Bug
- Difficulty
- 1/5
- Estimated time
- Under an hour
- Activity status
- Stale
- Clarity
- Clearly specified
- Newbie friendliness
- 55/100