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ivadomed

42 indexed repositories · View on GitHub

• ivadomed

  Repository on the collaborative IVADO medical imaging project between the Mila and NeuroPoly labs.

  Python · 166 stars

• model_seg_sci

  Deep-learning based segmentation of the spinal cord and intramedually lesions in traumatic and non-traumatic SCI

  Python · 18 stars

• multimodal-registration

  Repository for training and using a contrast agnostic registration model based on the work done in SynthMorph. The contrast agnostic regi...

  Python · 15 stars

• ms-challenge-2021

  MS segmentation challenge

  Python · 13 stars

• seg-sc-ms-lesion-multicontrast

  Robust Spinal Cord MS Lesion Segmentation Across Diverse MRI Protocols and Centers

  Python · 10 stars

• utilities

  Repository containing utility scripts for handling various aspects in a DL model training pipeline

  Python · 9 stars

• model-spinal-rootlets

  Deep-learning based segmentation of the spinal nerve rootlets

  Python · 8 stars

• SpineReport

  Automated extraction of spinal morphometrics and generation of structured radiological reports from MRI data.

  Python · 8 stars

• canproco

  Code for preprocessing the CanProCo brain and spinal cord dataset

  Jupyter Notebook · 5 stars

• model-seg-dcm

  Segmentation of lesions on MRI scans in patients with Degenerative Cervical Myelopathy (DCM)

  Shell · 3 stars

• model-seg-gm-wm-t2star-7t-unet2d-multiclass

  A deep learning model that allows robust SC/GM multi-class segmentation based on ultra-high resolution 7T T2*-w MR images

  3 stars

• model-canal-seg

  Python · 3 stars

• model_seg_sc-gm-lesion_human_ms_exvivo_t2star

  Model to segment WM, GM and MS lesions on 0.075mm isotropic GRE magnitude + phase ex vivo human samples from NIH.

  Python · 3 stars

• model_seg_csf_epi

  Model repository for spinal cord csf segmentation on EPI data

  Python · 2 stars

• model_sc_centerline

  Repository for automated spinal cord centerline detection using deep learning

  2 stars

• model_seg_mouse-sc_wm-gm_t1

  White and grey matter segmentation on T1-weighted exvivo mouse spinal cord

  Python · 2 stars

• lumbar-classification-rsna-challenge-2024

  RSNA 2024 Lumbar Spine Degenerative Classification Challenge

  Python · 2 stars

• model-seg-ms-mp2rage

  Model repository for SC MS lesion segmentation on MP2RAGE-UNI data from University of Basel, National Institutes of Health (NIH) and Aix-...

  Jupyter Notebook · 2 stars

• SpineFoundation

  This repo is containing all the code related to the spine foundation model.

  Python · 2 stars

• model_find_disc_t2

  1 star

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