imagej/imagej-omero

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Server- and client-side communication between ImageJ and OMERO

Stars: 12
Forks: 11
Open beginner issues: 0
Indexed issues: 52

Dominant language: Java
License: GPL-2.0
Last GitHub push: Oct 5, 2023
Latest indexed: Sep 17, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

Beginner friendly Everything

Open All

52 open issues indexed

Consider contributing ImageJ-OMERO details to the OMERO Guide Fiji repository Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

imagej/imagej-omero#114 · 1 comment · Opened Aug 22, 2022
Update IT for GitHub Actions Open

Difficulty 3/5 1-2 days Newbie friendliness 48/100

imagej/imagej-omero#113 · 1 comment · Opened Jul 21, 2022
Connecting to multiple OMERO servers doesn't seem to work Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 35/100

imagej/imagej-omero#112 · 1 comment · Opened Jul 13, 2022
Should we have the option to load image non-virtually? Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

imagej/imagej-omero#110 · 4 comments · Opened Jul 12, 2022
Leaking resources Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 30/100

imagej/imagej-omero#102 · Opened Jun 12, 2018
Closing app does not close session Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 45/100

imagej/imagej-omero#101 · 1 reaction · Opened Jun 11, 2018
Dicom with z-sections Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 25/100

imagej/imagej-omero#99 · 2 comments · Opened Jun 5, 2018
Load roi and draw new one Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 35/100

imagej/imagej-omero#97 · 3 comments · Opened Jun 5, 2018
Shape stroke width 1 Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 35/100

imagej/imagej-omero#96 · 1 comment · Opened Jun 5, 2018
SVS file Open

bug unscheduled

Difficulty 4/5 3-5 days Newbie friendliness 35/100

imagej/imagej-omero#95 · 1 comment · Opened Jun 5, 2018
Invalid ID Open

enhancement

Difficulty 3/5 1-2 days Newbie friendliness 35/100

imagej/imagej-omero#94 · 1 reaction · Opened Jun 5, 2018
Add exclusions to gen-scripts Open

enhancement

Difficulty 3/5 1-2 days Newbie friendliness 35/100

imagej/imagej-omero#91 · Opened May 31, 2018
Preserve Image Metadata Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 20/100

imagej/imagej-omero#90 · Opened May 31, 2018
Better Organization of Script/Session Results Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

imagej/imagej-omero#89 · Opened May 31, 2018
Attach scripts to output images Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

imagej/imagej-omero#88 · Opened May 31, 2018
Switch to write by tiles instead of planes Open

enhancement

Difficulty 3/5 1-2 days Newbie friendliness 45/100

imagej/imagej-omero#87 · Opened May 31, 2018
Cannot use OMERO plugins after session timeout Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 42/100

imagej/imagej-omero#85 · Opened May 31, 2018
Add Group ID parameter to commands Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

imagej/imagej-omero#84 · 7 comments · Opened May 31, 2018
Downloaded masks in RoiManager become fully opaque Open

bug unscheduled

Difficulty 3/5 1-2 days Newbie friendliness 35/100

imagej/imagej-omero#83 · Opened May 31, 2018
Text ROIs are not aligned consistently Open

bug unscheduled

Difficulty 4/5 3-5 days Newbie friendliness 30/100

imagej/imagej-omero#82 · Opened May 31, 2018
Error about unsupported -port7 option Open

bug unscheduled

Difficulty 3/5 1-2 days Newbie friendliness 35/100

imagej/imagej-omero#81 · Opened May 31, 2018
Add Support to Re-attach Annotations Open

enhancement unscheduled

Difficulty 5/5 Over a week Newbie friendliness 28/100

imagej/imagej-omero#75 · 1 comment · Opened Jan 24, 2018
Improve Efficiency of upload/download methods in OMEROService Open

enhancement unscheduled

Difficulty 5/5 Over a week Newbie friendliness 25/100

imagej/imagej-omero#74 · Opened Jan 24, 2018
Create Integration Tests for ROI Support Open

enhancement unscheduled

Difficulty 3/5 1-2 days Newbie friendliness 35/100

imagej/imagej-omero#73 · 1 comment · Opened Jan 24, 2018
Create Benchmark Tests for OMEROService Open

enhancement unscheduled

Difficulty 4/5 3-5 days Newbie friendliness 35/100

imagej/imagej-omero#72 · 1 comment · Opened Jan 24, 2018
Persistence mechanism for ROI operations Open

enhancement unscheduled

Difficulty 5/5 Over a week Newbie friendliness 25/100

imagej/imagej-omero#71 · 2 comments · Opened Jan 24, 2018
Add an option to use an encrypted connection Open

enhancement

Difficulty 3/5 1-2 days Newbie friendliness 42/100

imagej/imagej-omero#66 · 1 comment · Opened Sep 3, 2016
Upload to OMERO can operate on the wrong image Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 35/100

imagej/imagej-omero#63 · Opened Jun 3, 2015
Parameterized IJ1 macros do not fully work from OMERO server side Open

bug

Difficulty 5/5 Over a week Newbie friendliness 25/100

imagej/imagej-omero#62 · 2 comments · Opened Jun 2, 2015
Apply OMERO's rendering settings to the DatasetView Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 42/100

imagej/imagej-omero#60 · Opened May 21, 2015
Investigate nicer way to convert between unit data structures Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

imagej/imagej-omero#57 · 3 comments · Opened May 19, 2015
Eliminate redundant OMEROFormat.Metadata.name field Open

enhancement unscheduled

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

imagej/imagej-omero#56 · Opened Apr 29, 2015
Implement an image chooser widget with thumbnail browser Open

enhancement unscheduled

Difficulty 5/5 Over a week Newbie friendliness 25/100

imagej/imagej-omero#53 · 5 comments · Opened Apr 29, 2015
Support for Dataset and Project parameters Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 35/100

imagej/imagej-omero#45 · 2 comments · Opened Jun 6, 2014
Support for tagging from ImageJ scripts Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

imagej/imagej-omero#44 · 1 comment · Opened Jun 6, 2014
Save LUTs as initial rendering settings Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

imagej/imagej-omero#43 · Opened Jun 5, 2014
Exception when running Widgets_BeanShell.bsh Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 35/100

imagej/imagej-omero#41 · Opened May 22, 2014
Processing large image planes fails silently Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 25/100

imagej/imagej-omero#34 · 1 comment · Opened Mar 21, 2014
Error creating unencrypted client Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 25/100

imagej/imagej-omero#30 · 19 comments · Opened Mar 21, 2014
Execute ImageJ module over multiple images Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 38/100

imagej/imagej-omero#29 · 3 comments · Opened Mar 21, 2014
Use OMEROSession as input parameter Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

imagej/imagej-omero#25 · 2 comments · Opened Mar 13, 2014
Pass Image_ID from selected image in OMERO.web Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 30/100

imagej/imagej-omero#24 · 2 comments · Opened Mar 13, 2014
Consider treating ImageJ scripts as OMERO scripts Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

imagej/imagej-omero#20 · Opened Mar 12, 2014
Listen to notifications from OMERO server Open

enhancement unscheduled

Difficulty 5/5 Over a week Newbie friendliness 20/100

imagej/imagej-omero#14 · 4 comments · Opened Mar 12, 2014
Support "would be nice" commands from OMERO Open

enhancement unscheduled

Difficulty 5/5 Over a week Newbie friendliness 20/100

imagej/imagej-omero#13 · Opened Mar 12, 2014
Support "highly desirable" ImageJ commands from OMERO Open

enhancement unscheduled

Difficulty 5/5 Over a week Newbie friendliness 25/100

imagej/imagej-omero#12 · Opened Mar 12, 2014
Support "essential" ImageJ commands from OMERO Open

enhancement unscheduled

Difficulty 5/5 Over a week Newbie friendliness 25/100

imagej/imagej-omero#11 · Opened Mar 12, 2014
Experiment management interface for ImageJ Open

enhancement unscheduled

Difficulty 5/5 Over a week Newbie friendliness 25/100

imagej/imagej-omero#10 · Opened Mar 12, 2014
Rapid prototyping of ImageJ scripts Open

enhancement unscheduled

Difficulty 5/5 Over a week Newbie friendliness 25/100

imagej/imagej-omero#9 · Opened Mar 12, 2014
Make ImageJ-OMERO installable via OMEGO Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 30/100

imagej/imagej-omero#8 · 2 comments · Opened Mar 12, 2014

imagej/imagej-omero

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