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idem-lab

7 indexed repositories · View on GitHub

traveltime
Create maps of the time to travel from a user-supplied set of locations

PostScript · 13 stars
bayesflow-sbi-agent-kit
An AI agent toolkit to support simulation-based inference using BayesFlow

Python · 3 stars
epiwave
lowest-level functional interface for GPreff

R · 2 stars
ir_cube

R · 1 star
epiwave.params
Helper functions for building epidemiological parameter distributions

R · 0 stars
vci
Vectorial capacity and vector control impact (VCI) modelling for malaria vectors

Shell · 0 stars
idem_mech_hack
Playground for building the ~best model ever~ some mechanistic abm for the purposes of learning

R · 0 stars

Beginner friendly Everything

Open All

The nearest-country fill in prep_admin.R reaches too far Open

Difficulty 4/5 3-5 days Newbie friendliness 55/100

idem-lab/ir_cube#15 · Opened Sep 18, 2026
A floor on bioassay mortality in a fully resistant population Open

Difficulty 5/5 Over a week Newbie friendliness 30/100

idem-lab/ir_cube#14 · Opened Sep 18, 2026
Bioassay country labels disagree with the coordinates for 1.6% of records Open

Difficulty 5/5 Over a week Newbie friendliness 45/100

idem-lab/ir_cube#13 · Opened Sep 18, 2026
Add recovered ("R") state to model Open

Difficulty 3/5 1-2 days Newbie friendliness 55/100

idem-lab/idem_mech_hack#8 · Opened Sep 10, 2026
write a formal test suite Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

idem-lab/idem_mech_hack#7 · Opened Sep 10, 2026
rmse() computes bias, not RMSE Open

Difficulty 2/5 1-3 hours Newbie friendliness 82/100

idem-lab/ir_cube#11 · Opened Aug 31, 2026
Cross-validation should assess the predictive distribution, not point predictions Open

Difficulty 5/5 Over a week Newbie friendliness 42/100

idem-lab/ir_cube#10 · 2 comments · Opened Aug 31, 2026
expand roster Open

Difficulty 4/5 3-5 days Newbie friendliness 45/100

idem-lab/idem_mech_hack#6 · Opened Aug 13, 2026
codebase organisation Open

Difficulty 3/5 1-2 days Newbie friendliness 65/100

idem-lab/idem_mech_hack#5 · Opened Aug 13, 2026
enable individual-specific transition out of infectious state Open

Difficulty 5/5 Over a week Newbie friendliness 45/100

idem-lab/idem_mech_hack#4 · Opened Aug 13, 2026
Refine Rwanda smoke test example Open

Difficulty 4/5 3-5 days Newbie friendliness 45/100

idem-lab/vci#64 · Opened Jul 24, 2026
Survival and abundance are decoupled: VCI is invariant to absolute abundance Open

kernel scientific-decision

Difficulty 5/5 Over a week Newbie friendliness 25/100

idem-lab/vci#63 · Opened Jul 24, 2026
Decide accessibility and localisation requirements for country users Open

documentation

Difficulty 5/5 Over a week Newbie friendliness 30/100

idem-lab/vci#48 · Opened Jul 24, 2026
Define the minimum viable dashboard / integration API Open

infrastructure

Difficulty 5/5 Over a week Newbie friendliness 25/100

idem-lab/vci#47 · Opened Jul 24, 2026
Decide the first external model to target for an equivalence preset Open

scientific-decision

Difficulty 5/5 Over a week Newbie friendliness 35/100

idem-lab/vci#46 · Opened Jul 24, 2026
Milestone 0: minimal working example (district-level VCI smoke test) Open

kernel

idem-lab/vci#45 · 1 comment · 1 assignee · Opened Jul 24, 2026
Design how default input layers are discovered, fetched and cached Open

data-contract documentation infrastructure

Difficulty 5/5 Over a week Newbie friendliness 35/100

idem-lab/vci#40 · Opened Jul 22, 2026
Optional array-backend execution for the pixel-and-draw workload Open

infrastructure kernel

Difficulty 5/5 Over a week Newbie friendliness 35/100

idem-lab/vci#39 · Opened Jul 22, 2026
Session logs never reach the pull request Open

documentation infrastructure

Difficulty 5/5 Over a week Newbie friendliness 35/100

idem-lab/vci#37 · Opened Jul 22, 2026
Claude's engineering review of DESIGN.md Open

documentation infrastructure

Difficulty 5/5 Over a week Newbie friendliness 25/100

idem-lab/vci#35 · 1 comment · Opened Jul 22, 2026
Build test cases with independently worked-out correct answers Open

kernel

Difficulty 4/5 3-5 days Newbie friendliness 52/100

idem-lab/vci#33 · Opened Jul 22, 2026
Implement the result object and provenance capture Open

kernel

Difficulty 5/5 Over a week Newbie friendliness 35/100

idem-lab/vci#32 · Opened Jul 22, 2026
Implement the component model: functions, docs-as-registry, and presets Open

kernel

Difficulty 5/5 Over a week Newbie friendliness 30/100

idem-lab/vci#31 · Opened Jul 22, 2026
Implement compute_vci() and the comparison between scenarios Open

kernel

Difficulty 5/5 Over a week Newbie friendliness 48/100

idem-lab/vci#30 · Opened Jul 22, 2026
Implement aggregation of capacity across species Open

kernel

Difficulty 3/5 1-2 days Newbie friendliness 55/100

idem-lab/vci#29 · Opened Jul 22, 2026
Implement the vectorial capacity equation and its invariants Open

kernel

Difficulty 5/5 Over a week Newbie friendliness 35/100

idem-lab/vci#28 · Opened Jul 22, 2026
Implement the input data structure and its validation Open

data-contract kernel

Difficulty 5/5 Over a week Newbie friendliness 35/100

idem-lab/vci#27 · Opened Jul 22, 2026
Review the Stopard et al. temperature-dependent infection and EIP model Open

external-model

Difficulty 5/5 Over a week Newbie friendliness 35/100

idem-lab/vci#26 · Opened Jul 22, 2026
Review the hourly biting-profile model before encoding its equations Open

external-model

Difficulty 5/5 Over a week Newbie friendliness 35/100

idem-lab/vci#25 · Opened Jul 22, 2026
Review va_multispecies_sdm before depending on it for habitat estimation Open

external-model

Difficulty 4/5 3-5 days Newbie friendliness 38/100

idem-lab/vci#24 · Opened Jul 22, 2026
Review mosmicrosim before depending on it for microclimate and population dynamics Open

external-model

Difficulty 4/5 3-5 days Newbie friendliness 38/100

idem-lab/vci#23 · Opened Jul 22, 2026
Decide which interventions and products version 1 supports Open

scientific-decision

Difficulty 5/5 Over a week Newbie friendliness 35/100

idem-lab/vci#22 · Opened Jul 22, 2026
Decide the canonical resolution, and how default data layers are distributed Open

infrastructure scientific-decision

Difficulty 5/5 Over a week Newbie friendliness 25/100

idem-lab/vci#21 · 1 comment · Opened Jul 22, 2026
Decide how uncertainty is represented and propagated Open

scientific-decision

Difficulty 5/5 Over a week Newbie friendliness 25/100

idem-lab/vci#20 · Opened Jul 22, 2026
Define the reference scenario, and what happens when baseline capacity is zero Open

scientific-decision

Difficulty 5/5 Over a week Newbie friendliness 25/100

idem-lab/vci#19 · Opened Jul 22, 2026
Decide how interventions become effects, and how combinations of them compose Open

scientific-decision

Difficulty 5/5 Over a week Newbie friendliness 25/100

idem-lab/vci#17 · Opened Jul 22, 2026
Confirm how human landing catch data connect to abundance and biting rate Open

scientific-decision

Difficulty 5/5 Over a week Newbie friendliness 25/100

idem-lab/vci#16 · Opened Jul 22, 2026
Decide where to stop the sum of expected future infectious biting Open

scientific-decision

Difficulty 5/5 Over a week Newbie friendliness 35/100

idem-lab/vci#15 · Opened Jul 22, 2026
Settle the fine-timestep conventions for parasite development Open

scientific-decision

Difficulty 5/5 Over a week Newbie friendliness 35/100

idem-lab/vci#14 · Opened Jul 22, 2026
Choose the final symbol for host-destination fractions Open

notation scientific-decision

Difficulty 5/5 Over a week Newbie friendliness 30/100

idem-lab/vci#13 · Opened Jul 22, 2026
Write VALIDATION_PLAN.md: how we establish that the package is right Open

documentation

Difficulty 5/5 Over a week Newbie friendliness 45/100

idem-lab/vci#11 · Opened Jul 22, 2026
Write USER_ARCHETYPES.md: who this is for, and what they need to be able to do Open

documentation

Difficulty 5/5 Over a week Newbie friendliness 45/100

idem-lab/vci#10 · Opened Jul 22, 2026
Create ASSUMPTIONS.md: what the package assumes, and when those assumptions break Open

documentation scientific-decision

Difficulty 2/5 1-3 hours Newbie friendliness 76/100

idem-lab/vci#9 · Opened Jul 22, 2026
Create INTERVENTION_SCHEMA.json: what a valid intervention scenario looks like Open

data-contract

Difficulty 3/5 1-2 days Newbie friendliness 48/100

idem-lab/vci#8 · Opened Jul 22, 2026
Create VARIABLE_DICTIONARY.yml: one definitive entry per variable Open

data-contract documentation

Difficulty 5/5 Over a week Newbie friendliness 35/100

idem-lab/vci#7 · Opened Jul 22, 2026
Create EQUATION_DECISIONS.md: a record of every equation and where it came from Open

documentation scientific-decision

Difficulty 4/5 3-5 days Newbie friendliness 55/100

idem-lab/vci#6 · Opened Jul 22, 2026
Add adr/ with a template, and write up the decisions already made Open

documentation

Difficulty 3/5 1-2 days Newbie friendliness 74/100

idem-lab/vci#5 · Opened Jul 22, 2026
Add CONTRIBUTING.md and an explicit AI-contribution policy Open

documentation

Difficulty 3/5 1-2 days Newbie friendliness 76/100

idem-lab/vci#4 · Opened Jul 22, 2026
Add issue and PR templates carrying the "How this was produced" section Open

documentation infrastructure

Difficulty 3/5 1-2 days Newbie friendliness 62/100

idem-lab/vci#3 · Opened Jul 22, 2026
Add continuous integration: R CMD check and test coverage Open

infrastructure

Difficulty 4/5 3-5 days Newbie friendliness 48/100

idem-lab/vci#2 · 1 comment · Opened Jul 22, 2026

idem-lab

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