higlass / higlass/higlass-python

Unable to run higlass-python

Open
#198 7 comments 0 reactions 0 assignees View on GitHub
Dominant language
Python
Stars
66
Forks
11
PR merge metrics
No merged PRs in 30d

Description

Happy New Year, Hi-Glass team!

I attempted to run the HiGlass Python package locally in a Conda environment and encountered some issues.

When I tried to execute the test script, [hi-glass.py](https://github.com/user-attachments/files/24413088/hi-glass.py), I didn't receive any error messages, and no views of the .cool files appeared.

Here is the list of packages in my Conda environment:

Image
Image

Initially, I thought the problem might be related to my settings, so I continued to explore other options. I then tried running the Examples.ipynb file on Google Colab, but I still didn't see any results.

Image

I am wondering how to get the package to work properly. Thank you so much!

Contributor guide

Open the contributing guide

Assessment

This issue has not been assessed yet.

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.