higlass / higlass/higlass-python

HiGlass 1.3.4 not showing maps in Jupyter

Open
#196 1 comment 2 reactions 0 assignees View on GitHub
Dominant language
Python
Stars
66
Forks
11
PR merge metrics
No merged PRs in 30d

Description

Hello,

I didn't manage to make the last version of HiGlass (1.3.4) work to display interaction maps interactively in a Jupyter Notebook. I created a Python virtual environment and installed ipykernel 7.0.1. When running the command `view`, I got the following message:

[Open Browser Console for more detailed log - Double click to close this message]
Failed to load model class 'AnyModel' from module 'anywidget'

I then downgraded to HiGlass 1.3.3 and it seemed to work fine, but I figured I should report it in case someone else comes across the same issue.

Thanks!

Contributor guide

Open the contributing guide

Research direction

Reproduce the `view` command in a Jupyter environment using HiGlass 1.3.4 and ipykernel 7.0.1, then inspect the browser-console error about `AnyModel` from `anywidget`. Compare the same notebook with HiGlass 1.3.3 and determine what changed; done means interactive maps load successfully on the affected version.

Written by the indexing model from the issue text.

Assessment

Tech stack
jupyter-notebook, python
Domain
data-visualization
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
35/100

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.